Variant report

Variant	rs73487118
Chromosome Location	chr6:48953950-48953951
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16878348	1.00[AMR][1000 genomes]
rs16878433	1.00[AMR][1000 genomes]
rs16878490	1.00[AMR][1000 genomes]
rs16878788	1.00[AMR][1000 genomes]
rs57029386	1.00[AMR][1000 genomes]
rs60354442	1.00[AMR][1000 genomes]
rs61595977	1.00[AMR][1000 genomes]
rs6938508	1.00[AMR][1000 genomes]
rs73481407	1.00[AMR][1000 genomes]
rs73481471	1.00[AMR][1000 genomes]
rs73481493	1.00[AMR][1000 genomes]
rs73483386	1.00[AMR][1000 genomes]
rs73487127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7765308	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949690	chr6:48595821-49289855	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv603037	chr6:48804862-48995221	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv603049	chr6:48931959-49169337	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3405430	chr6:48949993-48954391	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:48951200-48957400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:48953600-48954200	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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