Variant report

Variant	rs16878788
Chromosome Location	chr6:49120743-49120744
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11755620	0.84[AFR][1000 genomes]
rs16878901	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16878906	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs473800	0.85[AFR][1000 genomes]
rs478469	0.84[AFR][1000 genomes]
rs480061	0.93[AFR][1000 genomes]
rs483257	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs485743	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs489459	0.91[AFR][1000 genomes]
rs491967	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs494529	0.93[AFR][1000 genomes]
rs496864	0.84[YRI][hapmap]
rs497233	0.86[AFR][1000 genomes]
rs498218	0.86[AFR][1000 genomes]
rs498400	0.91[AFR][1000 genomes]
rs503680	0.82[YRI][hapmap]
rs508223	1.00[AMR][1000 genomes]
rs520470	0.92[YRI][hapmap]
rs534565	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs534716	1.00[AMR][1000 genomes]
rs550485	0.85[AFR][1000 genomes]
rs552383	0.85[AFR][1000 genomes]
rs559196	1.00[AMR][1000 genomes]
rs559388	0.88[AFR][1000 genomes]
rs561215	0.93[AFR][1000 genomes]
rs561296	0.88[AFR][1000 genomes]
rs565702	0.86[AFR][1000 genomes]
rs567539	0.85[AFR][1000 genomes]
rs571802	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs574868	0.93[AFR][1000 genomes]
rs575461	0.92[YRI][hapmap]
rs59302833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61595977	1.00[AMR][1000 genomes]
rs6900147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6938508	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73487118	1.00[AMR][1000 genomes]
rs73487127	1.00[AMR][1000 genomes]
rs9349476	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949690	chr6:48595821-49289855	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv603049	chr6:48931959-49169337	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2755862	chr6:49081541-49298041	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:49112000-49122600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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