Variant report

Variant	rs11755620
Chromosome Location	chr6:49125846-49125847
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs16878788	0.84[AFR][1000 genomes]
rs4361604	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4562139	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs496864	0.84[YRI][hapmap]
rs503680	0.82[YRI][hapmap]
rs520470	0.92[YRI][hapmap]
rs56104201	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs575461	0.92[YRI][hapmap]
rs59302833	0.84[AFR][1000 genomes]
rs67397040	0.84[EUR][1000 genomes]
rs6900147	0.84[AFR][1000 genomes]
rs6915262	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72866872	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72868420	0.91[EUR][1000 genomes]
rs72868451	0.90[EUR][1000 genomes]
rs72868488	0.82[EUR][1000 genomes]
rs7744544	0.90[EUR][1000 genomes]
rs9349476	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9349479	0.89[EUR][1000 genomes]
rs9357600	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9357606	0.90[EUR][1000 genomes]
rs9369863	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9369864	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9381737	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9381738	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9381742	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9381750	0.90[EUR][1000 genomes]
rs9381752	0.88[EUR][1000 genomes]
rs9395456	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9395473	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949690	chr6:48595821-49289855	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv603049	chr6:48931959-49169337	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2755862	chr6:49081541-49298041	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:49122600-49128800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:49125600-49126400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:49125800-49126000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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