Variant report
| Variant | rs4562139 |
|---|---|
| Chromosome Location | chr6:49090869-49090870 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11755620 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4361604 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs56104201 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6915262 | 0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs72866872 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs72868420 | 0.86[EUR][1000 genomes] |
| rs72868451 | 0.84[EUR][1000 genomes] |
| rs7744544 | 0.84[EUR][1000 genomes] |
| rs9349476 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9349479 | 0.83[EUR][1000 genomes] |
| rs9357600 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9357606 | 0.84[EUR][1000 genomes] |
| rs9369863 | 0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9369864 | 0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9381737 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9381738 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9381742 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs9381750 | 0.84[EUR][1000 genomes] |
| rs9381752 | 0.82[EUR][1000 genomes] |
| rs9395456 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949690 | chr6:48595821-49289855 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv603049 | chr6:48931959-49169337 | Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv885880 | chr6:48975662-49102186 | Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Active TSS | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | esv2755862 | chr6:49081541-49298041 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:49090000-49091200 | Enhancers | Foreskin Keratinocyte Primary Cells skin02 | Skin |
| 2 | chr6:49090400-49103600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
