Variant report

Variant	rs9349479
Chromosome Location	chr6:49183699-49183700
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs11752340	0.83[AMR][1000 genomes]
rs11752910	0.86[AMR][1000 genomes]
rs11755620	0.89[EUR][1000 genomes]
rs11755646	0.83[AMR][1000 genomes]
rs12662707	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12664218	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16879241	0.86[AMR][1000 genomes]
rs1924982	0.83[AMR][1000 genomes]
rs2143730	0.83[AMR][1000 genomes]
rs4361604	0.84[EUR][1000 genomes]
rs4562139	0.83[EUR][1000 genomes]
rs471220	0.81[AMR][1000 genomes]
rs471332	0.81[AMR][1000 genomes]
rs475757	0.81[AMR][1000 genomes]
rs478550	0.81[AMR][1000 genomes]
rs481270	0.81[AMR][1000 genomes]
rs482930	0.81[AMR][1000 genomes]
rs483192	0.81[AMR][1000 genomes]
rs484942	0.81[AMR][1000 genomes]
rs485383	0.81[AMR][1000 genomes]
rs485474	0.81[AMR][1000 genomes]
rs485772	0.81[AMR][1000 genomes]
rs485976	0.81[AMR][1000 genomes]
rs492870	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs495303	0.81[AMR][1000 genomes]
rs496864	0.81[AMR][1000 genomes]
rs498825	0.81[AMR][1000 genomes]
rs500811	0.81[AMR][1000 genomes]
rs501835	0.81[AMR][1000 genomes]
rs503680	0.81[AMR][1000 genomes]
rs512497	0.81[AMR][1000 genomes]
rs520599	0.81[AMR][1000 genomes]
rs527399	0.81[AMR][1000 genomes]
rs530458	0.81[AMR][1000 genomes]
rs532017	0.81[AMR][1000 genomes]
rs532756	0.81[AMR][1000 genomes]
rs532785	0.81[AMR][1000 genomes]
rs537190	0.81[AMR][1000 genomes]
rs538016	0.81[AMR][1000 genomes]
rs539026	0.81[AMR][1000 genomes]
rs540164	0.81[AMR][1000 genomes]
rs544542	0.81[AMR][1000 genomes]
rs545472	0.81[AMR][1000 genomes]
rs545975	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs547757	0.81[AMR][1000 genomes]
rs548644	0.81[AMR][1000 genomes]
rs549464	0.81[AMR][1000 genomes]
rs551459	0.81[AMR][1000 genomes]
rs553437	0.81[AMR][1000 genomes]
rs556711	0.83[AMR][1000 genomes]
rs556807	0.81[AMR][1000 genomes]
rs56104201	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs562369	0.81[AMR][1000 genomes]
rs563271	0.81[AMR][1000 genomes]
rs564042	0.81[AMR][1000 genomes]
rs568369	0.81[AMR][1000 genomes]
rs568563	0.81[AMR][1000 genomes]
rs575461	0.81[AMR][1000 genomes]
rs577530	0.81[AMR][1000 genomes]
rs579712	0.81[AMR][1000 genomes]
rs6458682	0.86[AMR][1000 genomes]
rs67397040	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6915262	0.89[EUR][1000 genomes]
rs72866872	0.81[EUR][1000 genomes]
rs72868420	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72868451	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72868488	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72870316	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72870318	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72870365	0.83[AMR][1000 genomes]
rs7450140	0.83[AMR][1000 genomes]
rs7744544	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7764755	0.86[AMR][1000 genomes]
rs9349476	0.87[EUR][1000 genomes]
rs9349483	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9357600	0.83[EUR][1000 genomes]
rs9357606	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9357609	0.83[AMR][1000 genomes]
rs9357610	0.83[AMR][1000 genomes]
rs9357612	0.83[AMR][1000 genomes]
rs9369863	0.87[EUR][1000 genomes]
rs9369864	0.87[EUR][1000 genomes]
rs9369882	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9369884	0.86[AMR][1000 genomes]
rs9369886	0.86[AMR][1000 genomes]
rs9381737	0.87[EUR][1000 genomes]
rs9381738	0.87[EUR][1000 genomes]
rs9381742	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9381750	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9381752	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9381762	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9381766	0.83[AMR][1000 genomes]
rs9381767	0.81[AMR][1000 genomes]
rs9395456	0.84[EUR][1000 genomes]
rs9395473	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9395475	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9395476	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9395477	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949690	chr6:48595821-49289855	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2755862	chr6:49081541-49298041	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:49182400-49186000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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