Variant report

Variant	rs559196
Chromosome Location	chr6:49211431-49211432
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16878788	1.00[AMR][1000 genomes]
rs16878901	1.00[AMR][1000 genomes]
rs16878906	1.00[AMR][1000 genomes]
rs477051	0.83[YRI][hapmap]
rs483257	1.00[AMR][1000 genomes]
rs485743	1.00[AMR][1000 genomes]
rs491967	1.00[AMR][1000 genomes]
rs508223	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs534565	1.00[AMR][1000 genomes]
rs534716	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs539659	0.83[YRI][hapmap]
rs571802	1.00[AMR][1000 genomes]
rs59302833	1.00[AMR][1000 genomes]
rs6900147	1.00[AMR][1000 genomes]
rs6938508	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949690	chr6:48595821-49289855	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2755862	chr6:49081541-49298041	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:49211400-49213800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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