Variant report

Variant	rs534565
Chromosome Location	chr6:49201536-49201537
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs16878788	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16878901	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16878906	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs473800	0.89[AFR][1000 genomes]
rs476131	0.80[YRI][hapmap]
rs477051	1.00[YRI][hapmap]
rs478469	0.88[AFR][1000 genomes]
rs478991	0.83[YRI][hapmap]
rs480061	0.98[AFR][1000 genomes]
rs482046	0.82[AFR][1000 genomes]
rs483257	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs485743	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs489459	0.95[AFR][1000 genomes]
rs491715	0.82[AFR][1000 genomes]
rs491967	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs494529	0.98[AFR][1000 genomes]
rs497233	0.91[AFR][1000 genomes]
rs498218	0.91[AFR][1000 genomes]
rs498400	0.95[AFR][1000 genomes]
rs508223	1.00[AMR][1000 genomes]
rs510455	0.83[YRI][hapmap]
rs513031	0.83[YRI][hapmap]
rs514138	0.83[YRI][hapmap]
rs515566	0.93[AFR][1000 genomes]
rs520470	0.83[YRI][hapmap]
rs534716	1.00[AMR][1000 genomes]
rs539427	0.83[YRI][hapmap]
rs539659	1.00[YRI][hapmap]
rs539754	0.83[YRI][hapmap]
rs540175	0.82[AFR][1000 genomes]
rs540374	0.82[AFR][1000 genomes]
rs541985	0.82[AFR][1000 genomes]
rs544263	0.83[YRI][hapmap]
rs550485	0.89[AFR][1000 genomes]
rs552383	0.89[AFR][1000 genomes]
rs559196	1.00[AMR][1000 genomes]
rs559388	0.88[AFR][1000 genomes]
rs561215	0.98[AFR][1000 genomes]
rs561296	0.88[AFR][1000 genomes]
rs562011	0.84[AFR][1000 genomes]
rs563111	0.83[YRI][hapmap]
rs565702	0.91[AFR][1000 genomes]
rs565793	0.82[AFR][1000 genomes]
rs567539	0.89[AFR][1000 genomes]
rs568143	0.83[YRI][hapmap]
rs571802	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs572782	0.82[AFR][1000 genomes]
rs574868	0.98[AFR][1000 genomes]
rs575461	0.83[YRI][hapmap]
rs575753	0.88[AFR][1000 genomes]
rs59302833	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6900147	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6938508	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949690	chr6:48595821-49289855	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2755862	chr6:49081541-49298041	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:49186600-49205600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links