Variant report

Variant	rs6938508
Chromosome Location	chr6:49100173-49100174
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs16878490	1.00[AMR][1000 genomes]
rs16878788	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16878901	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16878906	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs480061	0.86[AFR][1000 genomes]
rs483257	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs485743	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs489459	0.84[AFR][1000 genomes]
rs491967	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs494529	0.86[AFR][1000 genomes]
rs498400	0.84[AFR][1000 genomes]
rs508223	1.00[AMR][1000 genomes]
rs534565	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs534716	1.00[AMR][1000 genomes]
rs559196	1.00[AMR][1000 genomes]
rs561215	0.86[AFR][1000 genomes]
rs571802	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs574868	0.86[AFR][1000 genomes]
rs59302833	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60354442	1.00[AMR][1000 genomes]
rs61595977	1.00[AMR][1000 genomes]
rs6900147	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73487118	1.00[AMR][1000 genomes]
rs73487127	1.00[AMR][1000 genomes]
rs9381737	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949690	chr6:48595821-49289855	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv603049	chr6:48931959-49169337	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv885880	chr6:48975662-49102186	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2755862	chr6:49081541-49298041	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:49090400-49103600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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