Variant report

Variant	rs16878490
Chromosome Location	chr6:48930964-48930965
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:48930520..48932119-chr6:48937053..48938837,2	MCF-7	breast:
2	chr6:48923639..48925740-chr6:48930258..48932509,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16878348	1.00[AMR][1000 genomes]
rs16878433	1.00[AMR][1000 genomes]
rs16878501	0.91[AFR][1000 genomes]
rs57029386	1.00[AMR][1000 genomes]
rs60354442	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61595977	1.00[AMR][1000 genomes]
rs6938508	1.00[AMR][1000 genomes]
rs73481407	1.00[AMR][1000 genomes]
rs73481471	1.00[AMR][1000 genomes]
rs73481493	1.00[AMR][1000 genomes]
rs73483386	1.00[AMR][1000 genomes]
rs73485191	0.90[AFR][1000 genomes]
rs73487118	1.00[AMR][1000 genomes]
rs73487127	1.00[AMR][1000 genomes]
rs7765308	1.00[AMR][1000 genomes]
rs9349462	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949690	chr6:48595821-49289855	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv603037	chr6:48804862-48995221	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv508406	chr6:48928106-48933198	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv603038	chr6:48928544-48938399	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv603039	chr6:48928544-48942969	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3486533	chr6:48928827-48938933	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3474549	chr6:48929393-48935091	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3474550	chr6:48929393-48935091	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3514847	chr6:48929843-48939641	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv5293	chr6:48930102-48942492	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv436519	chr6:48930207-48939735	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3514848	chr6:48930243-48939566	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv9681	chr6:48930724-48938727	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3472550	chr6:48930809-48938641	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3514853	chr6:48930838-48938656	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3514849	chr6:48930845-48938645	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3514850	chr6:48930855-48938582	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3472549	chr6:48930865-48938607	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv3472553	chr6:48930875-48938608	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv18961	chr6:48930877-48938505	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv3514851	chr6:48930883-48938595	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv3486534	chr6:48930887-48938583	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv823685	chr6:48930893-48938493	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv3472548	chr6:48930896-48938565	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
25	esv3472551	chr6:48930931-48938539	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
26	esv3514846	chr6:48930942-48938537	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
27	esv3472554	chr6:48930946-48938535	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
28	esv3486535	chr6:48930946-48938535	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
29	esv3514854	chr6:48930946-48938535	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:48832200-48944000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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