Variant report

Variant	rs16880676
Chromosome Location	chr6:69423950-69423951
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1033520	0.83[CEU][hapmap];0.92[EUR][1000 genomes]
rs41328149	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69420200-69428600	Weak transcription	Fetal Brain Female	brain
2	chr6:69421400-69436400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:69421800-69424800	Weak transcription	Brain Angular Gyrus	brain
4	chr6:69421800-69425800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr6:69421800-69428200	Weak transcription	Brain Anterior Caudate	brain
6	chr6:69422000-69425800	Weak transcription	K562	blood
7	chr6:69422400-69424600	Weak transcription	Fetal Heart	heart
8	chr6:69423200-69425200	Weak transcription	Brain Substantia Nigra	brain
9	chr6:69423600-69428000	Weak transcription	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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