Variant report

Variant	rs1033520
Chromosome Location	chr6:69384471-69384472
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69382904..69384801-chr6:69388403..69390209,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10945138	0.84[JPT][hapmap]
rs11752398	0.84[JPT][hapmap]
rs11752837	0.84[JPT][hapmap]
rs12201488	0.84[JPT][hapmap]
rs13218712	0.83[JPT][hapmap]
rs16880676	0.83[CEU][hapmap];0.92[EUR][1000 genomes]
rs2246104	0.90[JPT][hapmap]
rs2253759	0.93[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs2253866	0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs2254654	0.80[CHD][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs2585592	0.90[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2585597	0.86[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2585598	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2585599	0.86[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs2585600	0.86[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs2585604	0.86[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs2585621	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs2585622	0.81[CHD][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs2585623	0.91[ASN][1000 genomes]
rs2585626	0.84[JPT][hapmap]
rs2585627	0.91[CHD][hapmap];0.84[JPT][hapmap]
rs2746125	0.86[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs2746127	0.86[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2746130	0.96[ASN][1000 genomes]
rs2746131	0.92[ASN][1000 genomes]
rs2746132	0.90[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs2746134	0.96[ASN][1000 genomes]
rs2746137	0.83[JPT][hapmap]
rs2746140	0.97[ASN][1000 genomes]
rs2746141	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2802676	0.84[JPT][hapmap]
rs2802677	0.92[ASN][1000 genomes]
rs2802680	0.86[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs2802683	0.86[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs2802684	0.86[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs2802687	0.86[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2802688	0.86[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2802689	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs2802691	0.93[CHD][hapmap];0.89[JPT][hapmap]
rs2802693	0.93[CHD][hapmap];0.95[JPT][hapmap]
rs2802694	0.89[JPT][hapmap]
rs2802701	0.85[JPT][hapmap]
rs3121775	0.86[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs41328149	1.00[CEU][hapmap]
rs715294	0.84[JPT][hapmap]
rs7745837	0.84[JPT][hapmap]
rs7768591	0.84[JPT][hapmap]
rs9360356	0.87[YRI][hapmap];0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1015906	chr6:69376236-69416331	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69352200-69399000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:69364200-69399800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:69379200-69396200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:69379200-69398800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr6:69383000-69384800	Enhancers	Fetal Heart	heart
6	chr6:69383200-69400000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:69383400-69388200	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:69383600-69386400	Weak transcription	Brain Germinal Matrix	brain
9	chr6:69383600-69386400	Weak transcription	K562	blood
10	chr6:69383600-69396000	Weak transcription	Brain Substantia Nigra	brain
11	chr6:69383800-69388400	Weak transcription	Brain Anterior Caudate	brain
12	chr6:69384400-69386000	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links