Variant report

Variant	rs11752398
Chromosome Location	chr6:69447766-69447767
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:69444346..69447984-chr6:69448039..69451471,5	K562	blood:
2	chr6:69438379..69440553-chr6:69446567..69448077,2	K562	blood:
3	chr6:69446451..69447989-chr6:69452138..69453692,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1033520	0.84[JPT][hapmap]
rs10455674	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10455676	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484791	0.95[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.84[TSI][hapmap];0.97[ASN][1000 genomes]
rs10945138	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10945139	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10945141	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs10945142	0.85[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap]
rs11752837	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12154008	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12192235	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12199251	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12200101	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12201488	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12206940	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12210045	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12214149	0.85[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap]
rs13218712	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2073135	0.81[CHB][hapmap];0.91[CHD][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs2246104	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs2253759	0.84[GIH][hapmap];0.89[JPT][hapmap];0.87[TSI][hapmap]
rs2253866	0.88[CEU][hapmap];0.89[JPT][hapmap];0.86[EUR][1000 genomes]
rs2254654	1.00[CHB][hapmap];0.98[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.87[TSI][hapmap];0.94[ASN][1000 genomes]
rs2585592	0.95[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap];0.93[EUR][1000 genomes]
rs2585597	0.84[JPT][hapmap];0.88[EUR][1000 genomes]
rs2585598	0.89[ASW][hapmap];0.96[CEU][hapmap];0.95[GIH][hapmap];0.84[JPT][hapmap];0.85[MKK][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes]
rs2585599	0.87[CEU][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2585600	1.00[CEU][hapmap];0.90[JPT][hapmap];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2585604	0.92[CEU][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2585621	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2585622	0.84[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2585623	0.86[EUR][1000 genomes]
rs2585627	0.93[GIH][hapmap]
rs2746125	0.88[CEU][hapmap];0.89[JPT][hapmap];0.87[EUR][1000 genomes]
rs2746127	0.88[CEU][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes]
rs2746130	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2746131	0.87[EUR][1000 genomes]
rs2746132	1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.85[MKK][hapmap];0.95[TSI][hapmap];0.85[YRI][hapmap];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2746134	0.87[EUR][1000 genomes]
rs2746135	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2746137	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2746140	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2746141	0.87[GIH][hapmap];0.84[JPT][hapmap];0.89[TSI][hapmap]
rs2802676	0.95[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2802677	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2802680	0.92[CEU][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2802683	0.90[JPT][hapmap];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2802684	0.87[CEU][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2802687	0.96[CEU][hapmap];0.84[JPT][hapmap];0.86[YRI][hapmap];0.93[EUR][1000 genomes]
rs2802688	0.88[CEU][hapmap];0.84[JPT][hapmap];0.87[EUR][1000 genomes]
rs2802689	0.88[JPT][hapmap]
rs2802691	0.88[CEU][hapmap];0.98[GIH][hapmap];0.84[JPT][hapmap];0.91[TSI][hapmap]
rs2802693	0.89[JPT][hapmap]
rs2802694	0.84[JPT][hapmap]
rs2802701	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs3121775	0.96[CEU][hapmap];0.84[JPT][hapmap];0.86[YRI][hapmap];0.92[EUR][1000 genomes]
rs41328149	0.81[CHB][hapmap];0.86[CHD][hapmap];0.84[JPT][hapmap]
rs4358587	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4507548	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6931354	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs715294	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7745837	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768591	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69440800-69456800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr6:69440800-69456800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:69441000-69449400	Weak transcription	Brain Substantia Nigra	brain
4	chr6:69441200-69448000	Weak transcription	Brain Angular Gyrus	brain
5	chr6:69444800-69457000	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:69445600-69448000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:69447000-69447800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:69447400-69448400	Enhancers	H9 Cell Line	embryonic stem cell
9	chr6:69447400-69448400	Flanking Active TSS	K562	blood
10	chr6:69447600-69448400	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr6:69447600-69448600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr6:69447600-69448600	Enhancers	Primary hematopoietic stem cells	blood

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