Variant report

Variant	rs10455676
Chromosome Location	chr6:69462455-69462456
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69460973..69463599-chr6:69463618..69467509,4	K562	blood:
2	chr6:69457273..69460915-chr6:69461599..69464794,3	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10455674	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10484791	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10945138	0.98[ASN][1000 genomes]
rs10945139	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10945141	0.83[ASN][1000 genomes]
rs11752398	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752837	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12154008	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12192235	0.98[ASN][1000 genomes]
rs12199251	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12200101	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12201488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12206940	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12210045	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13218712	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2073135	0.88[ASN][1000 genomes]
rs2254654	0.94[ASN][1000 genomes]
rs2585592	0.86[EUR][1000 genomes]
rs2585597	0.82[EUR][1000 genomes]
rs2585598	0.88[EUR][1000 genomes]
rs2585599	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2585600	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2585604	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2585621	0.94[ASN][1000 genomes]
rs2585622	0.94[ASN][1000 genomes]
rs2746125	0.80[EUR][1000 genomes]
rs2746130	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2746131	0.82[EUR][1000 genomes]
rs2746132	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2746134	0.81[EUR][1000 genomes]
rs2746135	0.98[ASN][1000 genomes]
rs2746137	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2746140	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2802676	0.98[ASN][1000 genomes]
rs2802677	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2802680	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2802683	0.80[ASN][1000 genomes]
rs2802684	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2802687	0.86[EUR][1000 genomes]
rs2802688	0.80[EUR][1000 genomes]
rs3121775	0.85[EUR][1000 genomes]
rs4358587	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4507548	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6931354	0.83[ASN][1000 genomes]
rs715294	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7745837	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768591	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69452600-69464800	Weak transcription	Fetal Lung	lung
2	chr6:69457400-69466000	Weak transcription	Fetal Brain Female	brain
3	chr6:69457400-69466400	Weak transcription	Brain Anterior Caudate	brain
4	chr6:69457600-69464000	Weak transcription	Brain Substantia Nigra	brain
5	chr6:69461000-69464600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr6:69461000-69465400	Weak transcription	Brain Angular Gyrus	brain
7	chr6:69461200-69465000	Weak transcription	Brain Cingulate Gyrus	brain

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