Variant report

Variant	rs12210045
Chromosome Location	chr6:69433777-69433778
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69432642..69436384-chr6:69440400..69444068,5	K562	blood:
2	chr6:69411544..69413499-chr6:69432227..69434034,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10455674	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10455676	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10484791	0.95[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10945138	0.83[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10945139	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10945141	0.82[ASN][1000 genomes]
rs10945142	0.85[CHB][hapmap];0.88[CHD][hapmap]
rs11752398	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11752837	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12154008	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12192235	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12199251	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12200101	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12201488	1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12206940	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12214149	0.85[CHB][hapmap];0.88[CHD][hapmap]
rs13218712	1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2073135	0.80[CHB][hapmap];0.91[CHD][hapmap];0.87[ASN][1000 genomes]
rs2246104	0.82[CEU][hapmap];0.90[CHB][hapmap];0.84[JPT][hapmap]
rs2253759	0.84[GIH][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs2253866	0.95[CEU][hapmap];0.95[EUR][1000 genomes]
rs2254654	1.00[CHB][hapmap];0.98[CHD][hapmap];0.86[GIH][hapmap];0.84[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2585592	0.85[CEU][hapmap];0.85[CHB][hapmap];0.87[EUR][1000 genomes]
rs2585597	0.86[CEU][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2585598	0.87[CEU][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2585599	0.95[CEU][hapmap];0.83[JPT][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2585600	0.91[CEU][hapmap];0.83[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2585604	1.00[CEU][hapmap];0.83[JPT][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2585621	0.91[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2585622	0.91[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2585623	0.95[EUR][1000 genomes]
rs2585626	0.82[CEU][hapmap]
rs2585627	0.93[GIH][hapmap];0.83[TSI][hapmap]
rs2746125	0.95[CEU][hapmap];0.82[AFR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2746127	0.95[CEU][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2746130	0.83[AFR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2746131	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2746132	0.91[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2746134	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2746135	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2746137	1.00[CHB][hapmap];0.88[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2746140	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2746141	0.87[GIH][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2802676	0.83[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.89[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.96[TSI][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2802677	0.89[AFR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2802680	1.00[CEU][hapmap];0.83[JPT][hapmap];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2802683	0.83[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2802684	0.95[CEU][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];0.94[LWK][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2802687	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs2802688	0.95[CEU][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs2802691	0.95[CEU][hapmap];0.98[GIH][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs2802701	0.90[CHB][hapmap]
rs3121775	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs41328149	0.80[CHB][hapmap];0.86[CHD][hapmap]
rs4358587	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4507548	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6931354	0.82[ASN][1000 genomes]
rs715294	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7745837	1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7768591	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69421400-69436400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:69428800-69435000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69429000-69435400	Weak transcription	Brain Angular Gyrus	brain
4	chr6:69429000-69435400	Weak transcription	Fetal Brain Female	brain
5	chr6:69429200-69434000	Weak transcription	NHDF-Ad	bronchial
6	chr6:69429200-69435400	Weak transcription	Fetal Brain Male	brain
7	chr6:69432800-69434400	Enhancers	K562	blood
8	chr6:69432800-69434800	Enhancers	Fetal Heart	heart
9	chr6:69432800-69437000	Enhancers	Fetal Lung	lung

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