Variant report

Variant	rs41328149
Chromosome Location	chr6:69492852-69492853
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69481523..69484520-chr6:69489886..69492873,2	K562	blood:
2	chr6:69488300..69490179-chr6:69492286..69495172,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1033520	1.00[CEU][hapmap]
rs10484791	0.85[CHB][hapmap];0.90[CHD][hapmap];0.89[JPT][hapmap]
rs10945138	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs10945139	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs10945141	0.90[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap]
rs10945142	1.00[ASW][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10945143	0.92[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11752398	0.81[CHB][hapmap];0.86[CHD][hapmap];0.84[JPT][hapmap]
rs11752837	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs11757285	0.95[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs12154008	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs12201488	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs12210045	0.80[CHB][hapmap];0.86[CHD][hapmap]
rs12214149	1.00[ASW][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs13218712	0.83[JPT][hapmap]
rs16880676	0.91[CEU][hapmap]
rs2073135	0.92[ASW][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs2254654	0.80[CHB][hapmap];0.84[CHD][hapmap]
rs2585621	0.81[CHB][hapmap]
rs2585622	0.81[CHB][hapmap];0.84[CHD][hapmap]
rs2746137	0.83[JPT][hapmap]
rs2802676	0.86[CHD][hapmap];0.84[JPT][hapmap]
rs2802689	0.82[JPT][hapmap]
rs6931354	0.90[CHB][hapmap];0.94[JPT][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes]
rs715294	0.81[CHB][hapmap];0.86[CHD][hapmap];0.84[JPT][hapmap]
rs73459235	0.88[AFR][1000 genomes]
rs7745837	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs7768591	0.81[CHB][hapmap];0.86[CHD][hapmap];0.84[JPT][hapmap]
rs910123	0.85[YRI][hapmap];0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv886131	chr6:69480628-69545903	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv886132	chr6:69487204-69610281	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1017659	chr6:69489481-69520127	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69489600-69507000	Weak transcription	Fetal Lung	lung
2	chr6:69490400-69493400	Weak transcription	Fetal Brain Male	brain

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