Variant report

Variant	rs2802689
Chromosome Location	chr6:69373007-69373008
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69369127..69370671-chr6:69372780..69375655,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1033520	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs10484791	0.84[CEU][hapmap];0.88[JPT][hapmap]
rs10945138	0.96[CEU][hapmap];0.89[JPT][hapmap];0.88[EUR][1000 genomes]
rs10945139	0.81[CEU][hapmap];0.89[JPT][hapmap]
rs10945141	0.84[JPT][hapmap]
rs10945142	0.82[JPT][hapmap]
rs11752398	0.88[JPT][hapmap]
rs11752837	0.81[CEU][hapmap];0.89[JPT][hapmap]
rs12154008	0.81[CEU][hapmap];0.89[JPT][hapmap]
rs12192235	0.88[EUR][1000 genomes]
rs12201488	0.89[JPT][hapmap]
rs12214149	0.82[JPT][hapmap]
rs13218712	0.88[JPT][hapmap]
rs2073135	0.82[JPT][hapmap]
rs2246104	0.94[JPT][hapmap]
rs2253759	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2253866	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2254654	0.96[CEU][hapmap];0.94[JPT][hapmap];0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2585592	0.90[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs2585597	0.91[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs2585598	0.91[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs2585599	0.84[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs2585600	0.91[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs2585604	0.81[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs2585621	0.81[CEU][hapmap];0.94[JPT][hapmap]
rs2585622	0.80[CEU][hapmap];0.94[JPT][hapmap]
rs2585623	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2585626	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs2585627	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs2746125	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2746127	0.85[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs2746130	0.83[ASN][1000 genomes]
rs2746132	0.95[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs2746134	0.84[ASN][1000 genomes]
rs2746135	0.88[EUR][1000 genomes]
rs2746137	0.88[JPT][hapmap]
rs2746140	0.83[ASN][1000 genomes]
rs2746141	0.96[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2802676	0.96[CEU][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes]
rs2802680	0.81[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs2802683	1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2802684	0.84[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs2802687	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs2802688	0.85[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2802691	0.84[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2802693	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs2802694	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap]
rs2802701	0.89[JPT][hapmap]
rs3121775	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs41328149	0.82[JPT][hapmap]
rs6931354	0.84[JPT][hapmap]
rs715294	0.88[JPT][hapmap]
rs7745837	0.89[JPT][hapmap]
rs7768591	0.96[CEU][hapmap];0.88[JPT][hapmap];0.88[EUR][1000 genomes]
rs9360356	0.95[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69352200-69399000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:69364200-69399800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:69365800-69377400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:69367600-69377600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:69368400-69377800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr6:69368600-69376000	Weak transcription	K562	blood
7	chr6:69372000-69374400	Weak transcription	Fetal Lung	lung
8	chr6:69372400-69376200	Weak transcription	Brain Angular Gyrus	brain

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