Variant report

Variant	rs2253759
Chromosome Location	chr6:69372017-69372018
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69351017..69353999-chr6:69369365..69372357,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1033520	0.93[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs10484791	0.84[CEU][hapmap];0.95[GIH][hapmap];0.84[JPT][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes]
rs10945138	0.96[CEU][hapmap];0.89[JPT][hapmap];0.95[EUR][1000 genomes]
rs10945139	0.81[CEU][hapmap];0.84[JPT][hapmap];0.84[EUR][1000 genomes]
rs11752398	0.84[GIH][hapmap];0.89[JPT][hapmap];0.87[TSI][hapmap]
rs11752837	0.81[CEU][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes]
rs12154008	0.81[CEU][hapmap];0.84[JPT][hapmap];0.84[EUR][1000 genomes]
rs12192235	0.95[EUR][1000 genomes]
rs12200101	0.84[EUR][1000 genomes]
rs12201488	0.89[JPT][hapmap]
rs12206940	0.85[EUR][1000 genomes]
rs12210045	0.84[GIH][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs13218712	0.88[JPT][hapmap]
rs2246104	0.95[JPT][hapmap]
rs2253866	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2254654	0.88[ASW][hapmap];0.96[CEU][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];0.91[MKK][hapmap];0.95[TSI][hapmap];0.88[YRI][hapmap];0.89[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs2585592	0.90[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2585597	0.91[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2585598	0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.89[ASN][1000 genomes]
rs2585599	0.84[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2585600	0.91[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs2585604	0.81[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2585621	0.81[CEU][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes]
rs2585622	0.81[CEU][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.96[TSI][hapmap];0.87[EUR][1000 genomes]
rs2585623	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2585626	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs2585627	0.95[CHB][hapmap];0.98[CHD][hapmap];0.82[GIH][hapmap];0.89[JPT][hapmap];0.90[MEX][hapmap];0.82[TSI][hapmap]
rs2746125	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2746127	0.85[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2746130	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2746131	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2746132	0.95[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.86[TSI][hapmap];0.89[ASN][1000 genomes]
rs2746134	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2746135	0.96[EUR][1000 genomes]
rs2746137	0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs2746140	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2746141	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.84[MKK][hapmap];0.98[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2802676	0.96[CEU][hapmap];0.98[GIH][hapmap];0.89[JPT][hapmap];0.95[TSI][hapmap];0.96[EUR][1000 genomes]
rs2802677	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2802680	0.81[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2802683	1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2802684	0.84[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.90[JPT][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2802687	0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2802688	0.85[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2802689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2802691	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap]
rs2802693	0.88[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.86[MEX][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs2802694	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs2802696	0.81[EUR][1000 genomes]
rs2802701	0.90[JPT][hapmap]
rs3121775	0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs715294	0.84[GIH][hapmap];0.89[JPT][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs7745837	0.89[JPT][hapmap]
rs7768591	0.96[CEU][hapmap];0.98[GIH][hapmap];0.89[JPT][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes]
rs9360356	0.91[CHB][hapmap];0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv3350874	chr6:69370256-69372654	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv3338551	chr6:69370681-69372129	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69352200-69399000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:69364200-69399800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:69365800-69377400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:69367600-69377600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:69368400-69377800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr6:69368600-69376000	Weak transcription	K562	blood
7	chr6:69371800-69372400	Enhancers	Brain Angular Gyrus	brain
8	chr6:69372000-69374400	Weak transcription	Fetal Lung	lung

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