Variant report

Variant	rs10945139
Chromosome Location	chr6:69454989-69454990
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:69343299..69346561-chr6:69450371..69455015,5	K562	blood:
2	chr6:69343299..69346457-chr6:69451485..69455015,4	K562	blood:
3	chr6:69361390..69364365-chr6:69454708..69457307,2	K562	blood:

Variant related genes	Relation type
ENSG00000135298	Chromatin interaction
ENSG00000230910	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10455674	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10455676	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10484791	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10945138	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10945141	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs10945142	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs11752398	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11752837	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12154008	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12192235	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12199251	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12200101	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12201488	0.81[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12206940	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12210045	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12214149	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs13218712	0.95[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2073135	0.85[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs2246104	0.85[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap]
rs2253759	0.81[CEU][hapmap];0.84[JPT][hapmap];0.84[EUR][1000 genomes]
rs2253866	0.96[CEU][hapmap];0.90[JPT][hapmap];0.94[EUR][1000 genomes]
rs2254654	0.95[CHB][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2585592	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs2585597	0.85[CEU][hapmap];0.80[JPT][hapmap];0.96[EUR][1000 genomes]
rs2585598	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs2585599	0.96[CEU][hapmap];0.86[JPT][hapmap];0.96[EUR][1000 genomes]
rs2585600	0.92[CEU][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes]
rs2585604	1.00[CEU][hapmap];0.86[JPT][hapmap];0.97[EUR][1000 genomes]
rs2585621	0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2585622	0.92[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2585623	0.94[EUR][1000 genomes]
rs2585626	0.85[CEU][hapmap]
rs2746125	0.96[CEU][hapmap];0.85[JPT][hapmap];0.95[EUR][1000 genomes]
rs2746127	0.96[CEU][hapmap];0.80[JPT][hapmap];0.94[EUR][1000 genomes]
rs2746130	0.97[EUR][1000 genomes]
rs2746131	0.95[EUR][1000 genomes]
rs2746132	0.92[CEU][hapmap];0.85[JPT][hapmap];0.89[EUR][1000 genomes]
rs2746134	0.95[EUR][1000 genomes]
rs2746135	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2746137	0.95[CHB][hapmap];0.94[JPT][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2746140	0.96[EUR][1000 genomes]
rs2746141	0.86[EUR][1000 genomes]
rs2802676	0.85[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2802677	0.97[EUR][1000 genomes]
rs2802680	1.00[CEU][hapmap];0.86[JPT][hapmap];0.95[EUR][1000 genomes]
rs2802683	0.82[CEU][hapmap];0.86[JPT][hapmap];0.86[EUR][1000 genomes]
rs2802684	0.96[CEU][hapmap];0.85[JPT][hapmap];0.97[EUR][1000 genomes]
rs2802687	0.89[CEU][hapmap];0.80[JPT][hapmap];0.87[EUR][1000 genomes]
rs2802688	0.96[CEU][hapmap];0.80[JPT][hapmap];0.95[EUR][1000 genomes]
rs2802689	0.81[CEU][hapmap];0.89[JPT][hapmap]
rs2802691	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs2802693	0.84[JPT][hapmap]
rs2802694	0.80[JPT][hapmap]
rs2802701	0.81[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs3121775	0.89[CEU][hapmap];0.80[JPT][hapmap];0.86[EUR][1000 genomes]
rs41328149	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs4358587	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4507548	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6931354	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs715294	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7745837	0.81[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7768591	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69440800-69456800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr6:69440800-69456800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:69444800-69457000	Weak transcription	Brain Hippocampus Middle	brain
4	chr6:69452600-69456800	Weak transcription	Brain Anterior Caudate	brain
5	chr6:69452600-69457200	Weak transcription	Brain Angular Gyrus	brain
6	chr6:69452600-69464800	Weak transcription	Fetal Lung	lung
7	chr6:69453600-69456800	Weak transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links