Variant report

Variant	rs12214149
Chromosome Location	chr6:69508348-69508349
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69504737..69507023-chr6:69507308..69508878,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10484791	0.80[CHB][hapmap];0.93[CHD][hapmap];0.84[JPT][hapmap]
rs10945138	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs10945139	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs10945141	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[EUR][1000 genomes]
rs10945142	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10945143	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11752398	0.85[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap]
rs11752837	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs11757285	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12154008	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs12201488	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs12210045	0.85[CHB][hapmap];0.88[CHD][hapmap]
rs13218712	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs2073135	0.92[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.89[EUR][1000 genomes]
rs2246104	0.84[JPT][hapmap]
rs2254654	0.85[CHB][hapmap];0.86[CHD][hapmap];0.84[JPT][hapmap]
rs2585599	0.80[JPT][hapmap]
rs2585600	0.80[JPT][hapmap]
rs2585604	0.80[JPT][hapmap]
rs2585621	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs2585622	0.85[CHB][hapmap];0.86[CHD][hapmap];0.84[JPT][hapmap]
rs2746132	0.80[JPT][hapmap]
rs2746137	0.84[CHB][hapmap];0.88[JPT][hapmap]
rs2802676	0.81[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap]
rs2802680	0.80[JPT][hapmap]
rs2802683	0.80[JPT][hapmap]
rs2802684	0.80[JPT][hapmap]
rs2802689	0.82[JPT][hapmap]
rs41328149	1.00[ASW][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs6931354	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.89[EUR][1000 genomes]
rs715294	0.85[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap]
rs73459235	0.81[AFR][1000 genomes]
rs7745837	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs7768591	0.85[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap]
rs910123	0.85[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv886131	chr6:69480628-69545903	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv886132	chr6:69487204-69610281	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1017659	chr6:69489481-69520127	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69505600-69522800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:69505600-69536000	Weak transcription	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links