Variant report

Variant	rs2073135
Chromosome Location	chr6:69468150-69468151
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69443233..69444846-chr6:69468097..69471005,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10455674	0.85[ASN][1000 genomes]
rs10455676	0.88[ASN][1000 genomes]
rs10484791	0.85[CHB][hapmap];0.95[CHD][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs10945138	0.84[CHB][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs10945139	0.85[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs10945141	1.00[CEU][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10945142	0.92[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.88[YRI][hapmap];0.85[EUR][1000 genomes]
rs10945143	0.85[EUR][1000 genomes]
rs11752398	0.81[CHB][hapmap];0.91[CHD][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs11752837	0.81[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs11757285	0.89[EUR][1000 genomes]
rs12154008	0.85[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs12192235	0.87[ASN][1000 genomes]
rs12200101	0.89[ASN][1000 genomes]
rs12201488	0.81[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs12206940	0.87[ASN][1000 genomes]
rs12210045	0.80[CHB][hapmap];0.91[CHD][hapmap];0.87[ASN][1000 genomes]
rs12214149	0.92[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.89[EUR][1000 genomes]
rs13218712	0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs2254654	0.80[CHB][hapmap];0.88[CHD][hapmap];0.82[ASN][1000 genomes]
rs2585621	0.81[CHB][hapmap];0.82[ASN][1000 genomes]
rs2585622	0.81[CHB][hapmap];0.88[CHD][hapmap];0.82[ASN][1000 genomes]
rs2746135	0.86[ASN][1000 genomes]
rs2746137	0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs2802676	0.91[CHD][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs2802689	0.82[JPT][hapmap]
rs41328149	0.92[ASW][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs4358587	0.83[ASN][1000 genomes]
rs4507548	0.83[ASN][1000 genomes]
rs6931354	1.00[CEU][hapmap];0.94[JPT][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs715294	0.81[CHB][hapmap];0.91[CHD][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs7745837	0.81[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs7768591	0.81[CHB][hapmap];0.90[CHD][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs910123	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69463400-69470800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:69464000-69469000	Enhancers	Brain Substantia Nigra	brain
3	chr6:69464800-69468400	Enhancers	Fetal Lung	lung
4	chr6:69465200-69468200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:69465400-69468600	Enhancers	Brain Angular Gyrus	brain
6	chr6:69467000-69468200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr6:69467000-69470000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:69467200-69468600	Weak transcription	K562	blood
9	chr6:69467200-69470800	Weak transcription	Fetal Brain Male	brain
10	chr6:69467200-69485000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:69467400-69470000	Weak transcription	Fetal Brain Female	brain
12	chr6:69467800-69469000	Enhancers	Brain Anterior Caudate	brain
13	chr6:69468000-69468200	Enhancers	Primary hematopoietic stem cells	blood
14	chr6:69468000-69468800	Enhancers	Brain Hippocampus Middle	brain

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