Variant report

Variant	rs2746135
Chromosome Location	chr6:69427161-69427162
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:69426489..69429415-chr6:69449508..69452167,3	K562	blood:
2	chr6:69417656..69421802-chr6:69423180..69427758,4	K562	blood:
3	chr6:69365593..69367286-chr6:69425025..69427900,2	K562	blood:
4	chr6:69423520..69425895-chr6:69426993..69429775,2	K562	blood:
5	chr6:69345001..69346732-chr6:69426662..69428369,2	K562	blood:

Variant related genes	Relation type
ENSG00000135298	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10455674	0.93[ASN][1000 genomes]
rs10455676	0.98[ASN][1000 genomes]
rs10484791	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10945138	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10945139	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10945141	0.81[ASN][1000 genomes]
rs11752398	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11752837	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12154008	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12192235	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12199251	0.91[ASN][1000 genomes]
rs12200101	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12201488	0.98[ASN][1000 genomes]
rs12206940	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12210045	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13218712	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2073135	0.86[ASN][1000 genomes]
rs2253759	0.96[EUR][1000 genomes]
rs2253866	0.86[EUR][1000 genomes]
rs2254654	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2585597	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2585598	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2585599	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2585600	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2585604	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2585621	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2585622	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2585623	0.86[EUR][1000 genomes]
rs2746125	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2746127	0.85[EUR][1000 genomes]
rs2746130	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2746131	0.87[EUR][1000 genomes]
rs2746132	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2746134	0.87[EUR][1000 genomes]
rs2746137	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2746140	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2746141	0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2802676	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2802677	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2802680	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2802683	0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2802684	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2802688	0.86[EUR][1000 genomes]
rs2802689	0.88[EUR][1000 genomes]
rs4358587	0.86[ASN][1000 genomes]
rs4507548	0.86[ASN][1000 genomes]
rs6931354	0.81[ASN][1000 genomes]
rs715294	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7745837	0.98[ASN][1000 genomes]
rs7768591	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv970728	chr6:69426786-69430815	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69420200-69428600	Weak transcription	Fetal Brain Female	brain
2	chr6:69421400-69436400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:69421800-69428200	Weak transcription	Brain Anterior Caudate	brain
4	chr6:69423600-69428000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr6:69425600-69428200	Weak transcription	Brain Angular Gyrus	brain
6	chr6:69425800-69427800	Weak transcription	Fetal Heart	heart
7	chr6:69425800-69428000	Enhancers	K562	blood
8	chr6:69425800-69428600	Weak transcription	Brain Substantia Nigra	brain

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