Variant report

Variant	rs2746131
Chromosome Location	chr6:69413727-69413728
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1033520	0.92[ASN][1000 genomes]
rs10455674	0.84[EUR][1000 genomes]
rs10455676	0.82[EUR][1000 genomes]
rs10945138	0.86[EUR][1000 genomes]
rs10945139	0.95[EUR][1000 genomes]
rs11752398	0.87[EUR][1000 genomes]
rs11752837	0.95[EUR][1000 genomes]
rs12154008	0.95[EUR][1000 genomes]
rs12192235	0.86[EUR][1000 genomes]
rs12199251	0.84[EUR][1000 genomes]
rs12200101	0.95[EUR][1000 genomes]
rs12201488	0.81[EUR][1000 genomes]
rs12206940	0.81[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs12210045	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs13218712	0.88[EUR][1000 genomes]
rs2253759	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2253866	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2254654	0.83[EUR][1000 genomes]
rs2585592	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2585597	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2585598	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2585599	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2585600	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2585604	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2585621	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2585622	0.93[EUR][1000 genomes]
rs2585623	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2746125	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2746127	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2746130	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2746132	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2746134	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2746135	0.87[EUR][1000 genomes]
rs2746137	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2746140	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2746141	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2802676	0.86[EUR][1000 genomes]
rs2802677	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2802680	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2802683	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2802684	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2802687	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2802688	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2802691	0.84[EUR][1000 genomes]
rs3121775	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4358587	0.84[EUR][1000 genomes]
rs4507548	0.84[EUR][1000 genomes]
rs715294	0.96[EUR][1000 genomes]
rs7745837	0.82[EUR][1000 genomes]
rs7768591	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1015906	chr6:69376236-69416331	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69406000-69417800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:69406000-69419600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:69407400-69413800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:69407400-69413800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:69407600-69417600	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:69407600-69417800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:69411400-69414000	Weak transcription	Brain Anterior Caudate	brain
8	chr6:69411800-69417600	Weak transcription	Brain Angular Gyrus	brain
9	chr6:69412200-69414200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:69412200-69418200	Weak transcription	Brain Substantia Nigra	brain

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