Variant report

Variant	rs3121775
Chromosome Location	chr6:69379691-69379692
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69373114..69378102-chr6:69378626..69382768,5	K562	blood:
2	chr6:69364943..69367696-chr6:69378038..69379934,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1033520	0.86[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10455676	0.85[EUR][1000 genomes]
rs10945138	0.86[JPT][hapmap]
rs10945139	0.89[CEU][hapmap];0.80[JPT][hapmap];0.86[EUR][1000 genomes]
rs11752398	0.96[CEU][hapmap];0.84[JPT][hapmap];0.86[YRI][hapmap];0.92[EUR][1000 genomes]
rs11752837	0.89[CEU][hapmap];0.86[JPT][hapmap];0.86[EUR][1000 genomes]
rs12154008	0.89[CEU][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes]
rs12199251	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12200101	0.85[EUR][1000 genomes]
rs12201488	0.84[CEU][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes]
rs12206940	0.87[EUR][1000 genomes]
rs12210045	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs13218712	0.84[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2246104	0.82[CEU][hapmap];0.90[JPT][hapmap]
rs2253759	0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2253866	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2254654	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs2585592	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2585597	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2585598	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2585599	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2585600	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2585604	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2585621	0.89[CEU][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2585622	0.88[CEU][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2585623	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2585626	0.82[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs2585627	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs2746125	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2746127	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2746130	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2746131	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2746132	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2746134	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2746137	0.84[JPT][hapmap];0.87[EUR][1000 genomes]
rs2746140	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2746141	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2802676	0.84[JPT][hapmap]
rs2802677	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2802680	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2802683	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs2802684	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2802687	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2802688	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2802689	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs2802691	0.92[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.80[EUR][1000 genomes]
rs2802693	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs2802694	0.87[CHB][hapmap];0.90[JPT][hapmap]
rs2802701	0.86[JPT][hapmap]
rs4358587	0.88[EUR][1000 genomes]
rs4507548	0.88[EUR][1000 genomes]
rs715294	0.84[CEU][hapmap];0.84[JPT][hapmap];0.87[EUR][1000 genomes]
rs7745837	0.84[CEU][hapmap];0.86[JPT][hapmap];0.85[EUR][1000 genomes]
rs7768591	0.84[JPT][hapmap]
rs9360356	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1015906	chr6:69376236-69416331	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69352200-69399000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:69364200-69399800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:69374800-69382800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:69375000-69382800	Weak transcription	Fetal Lung	lung
5	chr6:69376400-69380200	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:69379200-69396200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:69379200-69398800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr6:69379400-69382800	Weak transcription	Brain Anterior Caudate	brain
9	chr6:69379400-69382800	Weak transcription	Brain Substantia Nigra	brain

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