Variant report

Variant	rs2746132
Chromosome Location	chr6:69414622-69414623
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69403489..69405402-chr6:69413851..69416592,2	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1033520	0.90[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs10455674	0.81[EUR][1000 genomes]
rs10455676	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10484791	0.85[JPT][hapmap];0.89[TSI][hapmap]
rs10945138	0.81[CHB][hapmap];0.90[JPT][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10945139	0.92[CEU][hapmap];0.85[JPT][hapmap];0.89[EUR][1000 genomes]
rs10945141	0.80[JPT][hapmap]
rs10945142	0.80[JPT][hapmap]
rs11752398	1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.85[MKK][hapmap];0.95[TSI][hapmap];0.85[YRI][hapmap];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11752837	0.92[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12154008	0.92[CEU][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes]
rs12192235	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12199251	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12200101	0.88[EUR][1000 genomes]
rs12201488	0.88[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12206940	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12210045	0.91[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12214149	0.80[JPT][hapmap]
rs13218712	0.81[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2246104	0.85[JPT][hapmap]
rs2253759	0.95[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.86[TSI][hapmap];0.89[ASN][1000 genomes]
rs2253866	0.89[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2254654	0.85[CHB][hapmap];0.85[JPT][hapmap];0.86[TSI][hapmap]
rs2585592	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2585597	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2585598	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2585599	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2585600	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2585604	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2585621	0.85[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.87[EUR][1000 genomes]
rs2585622	0.84[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs2585623	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2585626	0.95[CHB][hapmap]
rs2585627	0.90[CHB][hapmap];0.86[CHD][hapmap]
rs2746125	0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2746127	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2746130	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2746131	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2746134	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2746135	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2746137	0.89[JPT][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2746140	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2746141	1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.89[TSI][hapmap];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2802676	0.90[JPT][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2802677	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2802680	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2802683	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2802684	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2802687	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2802688	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2802689	0.95[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs2802691	0.88[CEU][hapmap];0.90[CHB][hapmap];0.88[CHD][hapmap];0.84[JPT][hapmap];0.91[TSI][hapmap]
rs2802693	0.95[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap]
rs2802694	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs2802701	0.80[JPT][hapmap]
rs3121775	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4358587	0.91[EUR][1000 genomes]
rs4507548	0.90[EUR][1000 genomes]
rs6931354	0.80[JPT][hapmap]
rs715294	0.88[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7745837	0.88[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7768591	0.81[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.91[TSI][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9360356	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1015906	chr6:69376236-69416331	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69406000-69417800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:69406000-69419600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:69407600-69417600	Weak transcription	Brain Hippocampus Middle	brain
4	chr6:69407600-69417800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:69411800-69417600	Weak transcription	Brain Angular Gyrus	brain
6	chr6:69412200-69418200	Weak transcription	Brain Substantia Nigra	brain
7	chr6:69413800-69414800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr6:69414000-69414800	Enhancers	Brain Anterior Caudate	brain
9	chr6:69414200-69414800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr6:69414200-69415800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr6:69414400-69419800	Weak transcription	Fetal Lung	lung
12	chr6:69414600-69415600	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr6:69414600-69418800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:69414600-69419000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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