Variant report

Variant	rs10484791
Chromosome Location	chr6:69464386-69464387
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69460973..69463599-chr6:69463618..69467509,4	K562	blood:
2	chr6:69457273..69460915-chr6:69461599..69464794,3	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10455674	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10455676	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10945138	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10945139	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10945141	0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs10945142	0.80[CHB][hapmap];0.93[CHD][hapmap];0.84[JPT][hapmap]
rs11752398	0.95[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.84[TSI][hapmap];0.97[ASN][1000 genomes]
rs11752837	0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12154008	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12192235	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12199251	0.88[ASN][1000 genomes]
rs12200101	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12201488	0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12206940	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12210045	0.95[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12214149	0.80[CHB][hapmap];0.93[CHD][hapmap];0.84[JPT][hapmap]
rs13218712	0.95[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs2073135	0.85[CHB][hapmap];0.95[CHD][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs2246104	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs2253759	0.84[CEU][hapmap];0.95[GIH][hapmap];0.84[JPT][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes]
rs2253866	0.89[JPT][hapmap]
rs2254654	0.81[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];0.89[JPT][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2585597	0.82[YRI][hapmap]
rs2585598	0.84[GIH][hapmap];0.89[TSI][hapmap]
rs2585599	0.85[JPT][hapmap]
rs2585600	0.85[JPT][hapmap]
rs2585604	0.85[JPT][hapmap];0.80[EUR][1000 genomes]
rs2585621	0.95[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs2585622	0.95[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];0.89[JPT][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap];0.91[ASN][1000 genomes]
rs2585627	0.82[GIH][hapmap]
rs2746125	0.84[JPT][hapmap]
rs2746130	0.80[EUR][1000 genomes]
rs2746132	0.85[JPT][hapmap];0.89[TSI][hapmap]
rs2746135	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2746137	0.95[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2746141	0.81[CEU][hapmap];0.98[GIH][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes]
rs2802676	0.93[ASW][hapmap];0.88[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.90[MKK][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2802677	0.81[EUR][1000 genomes]
rs2802680	0.85[JPT][hapmap]
rs2802683	0.84[CEU][hapmap];0.85[JPT][hapmap];0.90[EUR][1000 genomes]
rs2802684	0.86[ASW][hapmap];0.91[GIH][hapmap];0.85[JPT][hapmap];0.84[MKK][hapmap];0.91[TSI][hapmap];0.80[EUR][1000 genomes]
rs2802689	0.84[CEU][hapmap];0.88[JPT][hapmap]
rs2802691	0.87[GIH][hapmap];0.84[TSI][hapmap]
rs2802693	0.91[GIH][hapmap];0.84[JPT][hapmap]
rs2802701	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs41328149	0.85[CHB][hapmap];0.90[CHD][hapmap];0.89[JPT][hapmap]
rs4358587	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4507548	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6931354	0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs715294	0.95[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7745837	0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7768591	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69452600-69464800	Weak transcription	Fetal Lung	lung
2	chr6:69457400-69466000	Weak transcription	Fetal Brain Female	brain
3	chr6:69457400-69466400	Weak transcription	Brain Anterior Caudate	brain
4	chr6:69461000-69464600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:69461000-69465400	Weak transcription	Brain Angular Gyrus	brain
6	chr6:69461200-69465000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:69463400-69470800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:69464000-69469000	Enhancers	Brain Substantia Nigra	brain

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