Variant report

Variant	rs10945138
Chromosome Location	chr6:69439577-69439578
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:69438284..69440310-chr6:69450555..69453510,2	K562	blood:
2	chr6:69399809..69401625-chr6:69437402..69440315,2	K562	blood:
3	chr6:69438379..69440553-chr6:69446567..69448077,2	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1033520	0.84[JPT][hapmap]
rs10455674	0.94[ASN][1000 genomes]
rs10455676	0.98[ASN][1000 genomes]
rs10484791	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10945139	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10945141	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs10945142	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs11752398	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11752837	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12154008	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12192235	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12199251	0.92[ASN][1000 genomes]
rs12200101	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12201488	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12206940	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210045	0.83[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12214149	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs13218712	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2073135	0.84[CHB][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs2246104	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs2253759	0.96[CEU][hapmap];0.89[JPT][hapmap];0.95[EUR][1000 genomes]
rs2253866	0.82[CEU][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes]
rs2254654	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2585592	0.85[JPT][hapmap]
rs2585597	0.85[JPT][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2585598	0.84[JPT][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2585599	0.82[CEU][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2585600	0.90[JPT][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2585604	0.86[CEU][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2585621	1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2585622	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2585623	0.85[EUR][1000 genomes]
rs2585626	0.81[JPT][hapmap]
rs2585627	0.81[JPT][hapmap]
rs2746125	0.82[CEU][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2746127	0.82[CEU][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes]
rs2746130	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2746131	0.86[EUR][1000 genomes]
rs2746132	0.81[CHB][hapmap];0.90[JPT][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2746134	0.86[EUR][1000 genomes]
rs2746135	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2746137	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2746140	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2746141	0.92[CEU][hapmap];0.84[JPT][hapmap];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2802676	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2802677	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2802680	0.86[CEU][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2802683	0.96[CEU][hapmap];0.91[JPT][hapmap];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2802684	0.81[CEU][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2802687	0.86[JPT][hapmap]
rs2802688	0.82[CEU][hapmap];0.86[JPT][hapmap];0.85[EUR][1000 genomes]
rs2802689	0.96[CEU][hapmap];0.89[JPT][hapmap];0.88[EUR][1000 genomes]
rs2802691	0.81[CEU][hapmap];0.84[JPT][hapmap]
rs2802693	0.85[CEU][hapmap];0.89[JPT][hapmap]
rs2802694	0.89[CEU][hapmap];0.85[JPT][hapmap]
rs2802701	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs3121775	0.86[JPT][hapmap]
rs41328149	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs4358587	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4507548	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6931354	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs715294	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7745837	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7768591	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69436600-69444200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:69436800-69440200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:69438000-69441000	Enhancers	Fetal Lung	lung
4	chr6:69438600-69440400	Weak transcription	Fetal Brain Male	brain
5	chr6:69439200-69439600	Flanking Active TSS	Brain Cingulate Gyrus	brain
6	chr6:69439200-69439600	Flanking Active TSS	Brain Hippocampus Middle	brain
7	chr6:69439200-69440800	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr6:69439200-69441000	Active TSS	Brain Angular Gyrus	brain
9	chr6:69439200-69441000	Active TSS	Brain Anterior Caudate	brain
10	chr6:69439400-69440200	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr6:69439400-69441000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
12	chr6:69439400-69441000	Active TSS	Brain Substantia Nigra	brain
13	chr6:69439400-69442400	Weak transcription	K562	blood

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