Variant report

Variant	rs16880794
Chromosome Location	chr4:28586432-28586433
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10005058	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10019080	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10031620	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10470830	0.96[AFR][1000 genomes]
rs16880751	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16880767	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16880789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16880847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16880880	0.81[AFR][1000 genomes]
rs28375032	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28406573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28431184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28545490	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28610055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28736881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60975808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73120058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73120448	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73120452	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9990460	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010133	chr4:28273244-28642942	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1014938	chr4:28277683-28642942	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2757926	chr4:28543958-28839437	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	esv2759239	chr4:28543958-28839437	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
5	nsv878781	chr4:28568780-28680520	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:28570600-28587400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links