Variant report

Variant	rs28545490
Chromosome Location	chr4:28547494-28547495
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10005058	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10019080	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10031620	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10470830	0.90[AFR][1000 genomes]
rs16880751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16880767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16880789	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16880794	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16880847	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28375032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28406573	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28431184	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28610055	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28736881	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60975808	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73120058	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73120448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73120452	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9990460	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010133	chr4:28273244-28642942	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1014938	chr4:28277683-28642942	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2757926	chr4:28543958-28839437	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	esv2759239	chr4:28543958-28839437	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:28539600-28555200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:28547400-28547800	Enhancers	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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