Variant report

Variant	rs73120058
Chromosome Location	chr4:28603230-28603231
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10005058	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10019080	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10031620	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10470830	0.96[AFR][1000 genomes]
rs16880751	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16880767	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16880789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16880794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16880847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16880880	0.81[AFR][1000 genomes]
rs28375032	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28406573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28431184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28545490	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28610055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28736881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60975808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73120448	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73120452	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9990460	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010133	chr4:28273244-28642942	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1014938	chr4:28277683-28642942	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2757926	chr4:28543958-28839437	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	esv2759239	chr4:28543958-28839437	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
5	nsv878781	chr4:28568780-28680520	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv829894	chr4:28587323-28740840	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv1848641	chr4:28588964-28760835	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv461313	chr4:28592154-28661526	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv593893	chr4:28592154-28661526	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:28588200-28623400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:28602600-28603600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr4:28602800-28603800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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