Variant report

Variant	rs16881164
Chromosome Location	chr6:72058586-72058587
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:72054464..72056174-chr6:72056662..72059629,2	MCF-7	breast:

rs_ID	r²[population]
rs16881166	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16881172	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs45439898	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6455417	0.84[ASN][1000 genomes]
rs7743230	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7769629	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72031600-72060200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr6:72031600-72077400	Weak transcription	Pancreas	Pancrea
3	chr6:72034200-72058600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:72034800-72060400	Weak transcription	Left Ventricle	heart
5	chr6:72039400-72060600	Weak transcription	Aorta	Aorta
6	chr6:72043400-72060200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:72044200-72059400	Weak transcription	NH-A	brain
8	chr6:72044400-72060800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:72044800-72059000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:72044800-72059200	Weak transcription	HUVEC	blood vessel
11	chr6:72044800-72060000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:72045000-72059000	Weak transcription	Osteobl	bone
13	chr6:72045800-72072200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:72052800-72059000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:72052800-72059600	Weak transcription	NHDF-Ad	bronchial
16	chr6:72052800-72059800	Weak transcription	NHLF	lung
17	chr6:72053200-72059800	Weak transcription	HSMMtube	muscle
18	chr6:72053600-72061600	Weak transcription	Fetal Kidney	kidney
19	chr6:72055600-72060400	Weak transcription	Brain Angular Gyrus	brain
20	chr6:72056000-72060000	Weak transcription	Brain Germinal Matrix	brain
21	chr6:72056200-72058800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:72056200-72059800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:72056200-72059800	Weak transcription	Adipose Nuclei	Adipose
24	chr6:72056200-72059800	Weak transcription	Fetal Lung	lung
25	chr6:72056600-72059800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr6:72057000-72058800	Weak transcription	Placenta	Placenta
27	chr6:72057000-72059600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr6:72057000-72060200	Weak transcription	Brain Anterior Caudate	brain
29	chr6:72057000-72060600	Weak transcription	Lung	lung
30	chr6:72057400-72059800	Weak transcription	Brain Substantia Nigra	brain
31	chr6:72057600-72061600	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr6:72057800-72060200	Weak transcription	Brain Hippocampus Middle	brain
33	chr6:72058200-72059600	Weak transcription	HSMM	muscle
34	chr6:72058400-72060200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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