Variant report

Variant	rs16881172
Chromosome Location	chr6:72073947-72073948
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:72058788..72061450-chr6:72073178..72075353,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1192040	1.00[CHB][hapmap]
rs11964552	1.00[CHB][hapmap]
rs1535524	1.00[JPT][hapmap]
rs16880821	1.00[CHB][hapmap]
rs16881098	1.00[CHB][hapmap]
rs16881164	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16881166	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45439898	0.83[AMR][1000 genomes]
rs6455417	0.92[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6906156	1.00[JPT][hapmap]
rs7743230	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768778	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs7769629	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs828629	1.00[JPT][hapmap]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72031600-72077400	Weak transcription	Pancreas	Pancrea
2	chr6:72060000-72077200	Weak transcription	NHEK	skin
3	chr6:72060200-72074400	Weak transcription	HSMMtube	muscle
4	chr6:72060200-72074800	Weak transcription	HUVEC	blood vessel
5	chr6:72060800-72076600	Weak transcription	Left Ventricle	heart
6	chr6:72060800-72077400	Weak transcription	Right Ventricle	heart
7	chr6:72061000-72074400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr6:72061200-72077200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr6:72061600-72074400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:72061600-72097000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:72061800-72077200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr6:72066400-72076000	Weak transcription	Liver	Liver
13	chr6:72068600-72077400	Weak transcription	Psoas Muscle	Psoas
14	chr6:72068800-72075000	Weak transcription	NH-A	brain
15	chr6:72069400-72075400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:72070200-72081400	Weak transcription	Hela-S3	cervix
17	chr6:72070800-72074000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:72070800-72077200	Weak transcription	Lung	lung
19	chr6:72071000-72075200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:72071400-72074400	Strong transcription	HSMM	muscle
21	chr6:72071400-72074800	Weak transcription	Primary B cells from cord blood	blood
22	chr6:72071400-72077200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:72071400-72077800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr6:72071400-72085200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:72071600-72077400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:72071600-72083600	Weak transcription	Placenta	Placenta
27	chr6:72072200-72074400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:72072400-72075600	Weak transcription	A549	lung
29	chr6:72072600-72076800	Weak transcription	HMEC	breast
30	chr6:72072600-72077400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr6:72072800-72074400	Weak transcription	Fetal Heart	heart
32	chr6:72072800-72075600	Weak transcription	Fetal Lung	lung
33	chr6:72073400-72074000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr6:72073400-72074200	ZNF genes & repeats	Fetal Kidney	kidney
35	chr6:72073600-72074200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr6:72073800-72075400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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