Variant report

Variant	rs6906156
Chromosome Location	chr6:72039698-72039699
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11968687	0.83[CEU][hapmap]
rs1535524	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1885674	0.83[CEU][hapmap]
rs2295956	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4707910	0.86[EUR][1000 genomes]
rs4707912	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs701694	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7748559	0.83[CEU][hapmap]
rs828629	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs828630	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs828631	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs828632	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs828634	0.88[EUR][1000 genomes]
rs828635	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs828653	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs828654	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs828655	0.90[EUR][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72004200-72041600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:72004400-72043000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:72018000-72043200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:72018000-72043200	Weak transcription	HSMM	muscle
5	chr6:72020200-72043600	Weak transcription	HSMMtube	muscle
6	chr6:72031600-72040400	Weak transcription	Lung	lung
7	chr6:72031600-72056600	Weak transcription	Placenta	Placenta
8	chr6:72031600-72060200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr6:72031600-72077400	Weak transcription	Pancreas	Pancrea
10	chr6:72033800-72046000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr6:72034200-72053400	Weak transcription	Psoas Muscle	Psoas
12	chr6:72034200-72058600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:72034400-72052000	Weak transcription	Adipose Nuclei	Adipose
14	chr6:72034800-72060400	Weak transcription	Left Ventricle	heart
15	chr6:72036600-72043400	Weak transcription	A549	lung
16	chr6:72036600-72055800	Weak transcription	Fetal Lung	lung
17	chr6:72036800-72043200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr6:72037400-72042600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:72037600-72040600	Weak transcription	Fetal Muscle Leg	muscle
20	chr6:72037600-72042400	Weak transcription	NHDF-Ad	bronchial
21	chr6:72037600-72042800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:72039200-72040800	Weak transcription	Brain Anterior Caudate	brain
23	chr6:72039200-72047800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr6:72039400-72044600	Weak transcription	Fetal Kidney	kidney
25	chr6:72039400-72060600	Weak transcription	Aorta	Aorta
26	chr6:72039600-72042400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links