Variant report

Variant	rs828629
Chromosome Location	chr6:72043184-72043185
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:72037856..72040073-chr6:72041777..72043546,2	K562	blood:

Variant related genes	Relation type
ENSG00000232295	Chromatin interaction
ENSG00000230597	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11751548	0.88[CEU][hapmap]
rs11968687	0.87[CEU][hapmap]
rs1535524	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1885674	0.87[CEU][hapmap]
rs2295956	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4707910	0.86[EUR][1000 genomes]
rs4707912	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906156	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs701694	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7748559	0.81[CEU][hapmap]
rs828630	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs828631	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs828632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs828634	0.88[EUR][1000 genomes]
rs828635	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs828653	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs828654	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs828655	0.90[EUR][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72018000-72043200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:72018000-72043200	Weak transcription	HSMM	muscle
3	chr6:72020200-72043600	Weak transcription	HSMMtube	muscle
4	chr6:72031600-72056600	Weak transcription	Placenta	Placenta
5	chr6:72031600-72060200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr6:72031600-72077400	Weak transcription	Pancreas	Pancrea
7	chr6:72033800-72046000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:72034200-72053400	Weak transcription	Psoas Muscle	Psoas
9	chr6:72034200-72058600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:72034400-72052000	Weak transcription	Adipose Nuclei	Adipose
11	chr6:72034800-72060400	Weak transcription	Left Ventricle	heart
12	chr6:72036600-72043400	Weak transcription	A549	lung
13	chr6:72036600-72055800	Weak transcription	Fetal Lung	lung
14	chr6:72036800-72043200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:72039200-72047800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:72039400-72044600	Weak transcription	Fetal Kidney	kidney
17	chr6:72039400-72060600	Weak transcription	Aorta	Aorta
18	chr6:72040600-72056600	Weak transcription	Lung	lung
19	chr6:72041000-72043400	Weak transcription	Brain Hippocampus Middle	brain
20	chr6:72041600-72044800	Enhancers	NHLF	lung
21	chr6:72042400-72043600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:72042400-72045600	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr6:72042400-72045600	Enhancers	NHDF-Ad	bronchial
24	chr6:72042600-72044800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:72042800-72043800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr6:72042800-72045600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr6:72043000-72043400	Enhancers	Duodenum Smooth Muscle	Duodenum
28	chr6:72043000-72043600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:72043000-72044200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr6:72043000-72044200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:72043000-72044800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:72043000-72045000	Enhancers	Osteobl	bone

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