Variant report

Variant	rs701694
Chromosome Location	chr6:72055118-72055119
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:72054464..72056174-chr6:72056662..72059629,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1535524	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2295956	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4707910	0.81[EUR][1000 genomes]
rs4707912	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs828629	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs828630	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs828631	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs828632	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs828634	0.82[EUR][1000 genomes]
rs828635	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs828653	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs828654	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs828655	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72031600-72056600	Weak transcription	Placenta	Placenta
2	chr6:72031600-72060200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr6:72031600-72077400	Weak transcription	Pancreas	Pancrea
4	chr6:72034200-72058600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:72034800-72060400	Weak transcription	Left Ventricle	heart
6	chr6:72036600-72055800	Weak transcription	Fetal Lung	lung
7	chr6:72039400-72060600	Weak transcription	Aorta	Aorta
8	chr6:72040600-72056600	Weak transcription	Lung	lung
9	chr6:72043400-72060200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr6:72044200-72059400	Weak transcription	NH-A	brain
11	chr6:72044400-72060800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:72044800-72059000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:72044800-72059200	Weak transcription	HUVEC	blood vessel
14	chr6:72044800-72060000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:72045000-72059000	Weak transcription	Osteobl	bone
16	chr6:72045800-72072200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:72048000-72057200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:72052400-72055800	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr6:72052800-72055400	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr6:72052800-72059000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:72052800-72059600	Weak transcription	NHDF-Ad	bronchial
22	chr6:72052800-72059800	Weak transcription	NHLF	lung
23	chr6:72053000-72055400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:72053000-72055800	Weak transcription	Adipose Nuclei	Adipose
25	chr6:72053200-72059800	Weak transcription	HSMMtube	muscle
26	chr6:72053600-72061600	Weak transcription	Fetal Kidney	kidney
27	chr6:72053800-72055800	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr6:72054200-72057000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:72054200-72057200	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr6:72054400-72055200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr6:72054400-72056800	Weak transcription	HSMM	muscle
32	chr6:72054600-72055200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:72054800-72056600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links