Variant report

Variant	rs828653
Chromosome Location	chr6:72052237-72052238
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1535524	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2295956	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4707910	0.82[EUR][1000 genomes]
rs4707912	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906156	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs701694	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs828629	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs828630	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs828631	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs828632	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs828634	0.83[EUR][1000 genomes]
rs828635	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs828654	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs828655	0.91[EUR][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72031600-72056600	Weak transcription	Placenta	Placenta
2	chr6:72031600-72060200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr6:72031600-72077400	Weak transcription	Pancreas	Pancrea
4	chr6:72034200-72053400	Weak transcription	Psoas Muscle	Psoas
5	chr6:72034200-72058600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:72034800-72060400	Weak transcription	Left Ventricle	heart
7	chr6:72036600-72055800	Weak transcription	Fetal Lung	lung
8	chr6:72039400-72060600	Weak transcription	Aorta	Aorta
9	chr6:72040600-72056600	Weak transcription	Lung	lung
10	chr6:72043400-72060200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr6:72044200-72059400	Weak transcription	NH-A	brain
12	chr6:72044400-72060800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:72044600-72053200	Weak transcription	HSMM	muscle
14	chr6:72044800-72059000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:72044800-72059200	Weak transcription	HUVEC	blood vessel
16	chr6:72044800-72060000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:72045000-72059000	Weak transcription	Osteobl	bone
18	chr6:72045600-72053200	Weak transcription	Fetal Kidney	kidney
19	chr6:72045800-72072200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:72046800-72053200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:72048000-72057200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:72048400-72054200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:72048600-72053600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr6:72051400-72052800	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr6:72051600-72052400	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr6:72051600-72052800	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr6:72051800-72052400	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr6:72051800-72052800	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr6:72052000-72052600	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr6:72052000-72052600	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr6:72052000-72052800	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr6:72052000-72052800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:72052000-72053000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:72052000-72053000	Enhancers	Adipose Nuclei	Adipose
35	chr6:72052000-72053200	Enhancers	HSMMtube	muscle
36	chr6:72052200-72052600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr6:72052200-72052600	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr6:72052200-72052800	Enhancers	NHDF-Ad	bronchial

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