Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1044762	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1056849	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1135027	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11751548	0.94[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11968687	0.94[CEU][hapmap];0.82[CHB][hapmap];0.90[CHD][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13209437	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1535524	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs1885674	0.94[CEU][hapmap];0.92[GIH][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs2295956	0.88[CEU][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs4707912	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs6906156	0.83[CEU][hapmap]
rs6934130	0.81[EUR][1000 genomes]
rs701694	0.81[EUR][1000 genomes]
rs7742362	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7748559	0.88[CEU][hapmap];0.87[CHD][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.93[TSI][hapmap]
rs7773129	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs828629	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs828631	0.86[EUR][1000 genomes]
rs828632	0.86[EUR][1000 genomes]
rs828635	0.86[EUR][1000 genomes]
rs828653	0.82[EUR][1000 genomes]
rs828654	0.81[EUR][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs4707910	MTO1	cis	cerebellum	SCAN
rs4707910	FAM135A	cis	cerebellum	SCAN
rs4707910	OGFRL1	cis	cerebellum	SCAN
rs4707910	MTO1	cis	parietal	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71999800-72033800	Weak transcription	Right Ventricle	heart
2	chr6:72001000-72038800	Weak transcription	Aorta	Aorta
3	chr6:72004200-72030600	Weak transcription	Lung	lung
4	chr6:72004200-72041600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:72004400-72030800	Weak transcription	Pancreas	Pancrea
6	chr6:72004400-72043000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:72010800-72038800	Weak transcription	Fetal Kidney	kidney
8	chr6:72011600-72033600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:72013200-72035800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:72018000-72037800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:72018000-72043200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:72018000-72043200	Weak transcription	HSMM	muscle
13	chr6:72018600-72030800	Weak transcription	Placenta	Placenta
14	chr6:72020200-72043600	Weak transcription	HSMMtube	muscle
15	chr6:72022200-72031200	Weak transcription	Left Ventricle	heart
16	chr6:72023200-72031200	Weak transcription	Liver	Liver
17	chr6:72026800-72035800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr6:72029400-72033800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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