Variant report

Variant	rs1044762
Chromosome Location	chr6:72017853-72017854
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:8)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:72005926..72007914-chr6:72016379..72018207,2	K562	blood:

(count:8 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-B3GAT2-2	chr6:72017644-72017894	ENSG00000232295.1
2	lnc-OGFRL1-4	chr6:72016167-72018653	NONHSAT113481
3	lnc-B3GAT2-3	chr6:72017558-72017894	NONHSAT113482
4	lnc-B3GAT2-3	chr6:72017644-72017894	ENSG00000232295.3
5	lnc-B3GAT2-3	chr6:72017648-72017894	ENSG00000232295.3
6	lnc-B3GAT2-3	chr6:72017705-72017894	ENSG00000232295.3
7	lnc-B3GAT2-3	chr6:72017729-72017894	ENSG00000232295.3
8	lnc-B3GAT2-3	chr6:72017829-72017894	ENSG00000232295.3

No data

Extended variants
information (count: 24 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1056849	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1135027	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11751548	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11968687	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13209437	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13216841	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1535524	0.92[CEU][hapmap];0.83[YRI][hapmap]
rs1885674	0.94[CEU][hapmap];0.92[GIH][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs2295956	0.82[ASW][hapmap];0.88[CEU][hapmap];0.94[LWK][hapmap];0.82[MKK][hapmap];0.93[TSI][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes]
rs34141332	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs34724667	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35051193	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4707910	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4707912	0.86[CEU][hapmap]
rs62406869	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67216056	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6906156	0.83[CEU][hapmap]
rs6929250	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6934130	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7742362	0.86[CHB][hapmap];0.84[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7748559	0.88[CEU][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7750007	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7773129	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs828629	0.94[CEU][hapmap]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1044762	MTO1	cis	cerebellum	SCAN
rs1044762	MTO1	cis	parietal	SCAN
rs1044762	FAM135A	cis	cerebellum	SCAN
rs1044762	OGFRL1	cis	cerebellum	SCAN

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71999800-72033800	Weak transcription	Right Ventricle	heart
2	chr6:72001000-72021600	Weak transcription	Fetal Lung	lung
3	chr6:72001000-72038800	Weak transcription	Aorta	Aorta
4	chr6:72001800-72020000	Weak transcription	Fetal Brain Female	brain
5	chr6:72002000-72022000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:72004200-72018800	Weak transcription	Brain Angular Gyrus	brain
7	chr6:72004200-72021800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:72004200-72030600	Weak transcription	Lung	lung
9	chr6:72004200-72041600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:72004400-72018000	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr6:72004400-72019600	Weak transcription	NH-A	brain
12	chr6:72004400-72021600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:72004400-72030800	Weak transcription	Pancreas	Pancrea
14	chr6:72004400-72043000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:72004600-72019200	Weak transcription	Osteobl	bone
16	chr6:72007000-72023000	Weak transcription	Liver	Liver
17	chr6:72009800-72025800	Weak transcription	Hela-S3	cervix
18	chr6:72010000-72019000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:72010200-72019600	Weak transcription	A549	lung
20	chr6:72010800-72020000	Weak transcription	Brain Hippocampus Middle	brain
21	chr6:72010800-72022400	Weak transcription	NHEK	skin
22	chr6:72010800-72038800	Weak transcription	Fetal Kidney	kidney
23	chr6:72011400-72018800	Weak transcription	Fetal Brain Male	brain
24	chr6:72011600-72020000	Weak transcription	Left Ventricle	heart
25	chr6:72011600-72021600	Weak transcription	Psoas Muscle	Psoas
26	chr6:72011600-72022600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:72011600-72033600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:72011800-72019000	Weak transcription	HSMMtube	muscle
29	chr6:72011800-72022600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr6:72011800-72022800	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr6:72012000-72018000	Weak transcription	Primary hematopoietic stem cells	blood
32	chr6:72012000-72019000	Weak transcription	Brain Anterior Caudate	brain
33	chr6:72012800-72018800	Weak transcription	Gastric	stomach
34	chr6:72012800-72019000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr6:72013200-72019400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:72013200-72020200	Weak transcription	HMEC	breast
37	chr6:72013200-72022400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr6:72013200-72035800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr6:72013400-72019000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr6:72013400-72019000	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr6:72013800-72022600	Weak transcription	Adipose Nuclei	Adipose
42	chr6:72014000-72019000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:72014200-72018400	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr6:72014400-72019200	Weak transcription	Primary B cells from cord blood	blood
45	chr6:72015600-72018000	Strong transcription	HSMM	muscle
46	chr6:72017000-72018800	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr6:72017400-72018600	Strong transcription	Placenta	Placenta
48	chr6:72017600-72018000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr6:72017600-72018000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr6:72017600-72018000	Enhancers	Fetal Heart	heart

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