Variant report

Variant	rs6934130
Chromosome Location	chr6:71997125-71997126
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:71997097-71997170	ProgFib	skin:	n/a	n/a
2	USF1	chr6:71996909-71997135	SK-N-SH_RA	brain:	n/a	n/a
3	POLR2A	chr6:71996908-71999723	Raji	blood:	n/a	n/a
4	USF1	chr6:71996815-71997146	SK-N-SH_RA	brain:	n/a	n/a
5	KAP1	chr6:71997034-71998298	HEK293	kidney:	n/a	n/a

Variant related genes	Relation type
OGFRL1	TF binding region
ENSG00000232295	TF binding region

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1044762	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1056849	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1135027	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11751548	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11968687	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13209437	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13216841	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1885674	0.90[EUR][1000 genomes]
rs34141332	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34724667	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35051193	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4707910	0.81[EUR][1000 genomes]
rs62406869	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67216056	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6929250	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7742362	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7748559	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7750007	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7773129	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6934130	OGFRL1	cis	brain	BrainEAC

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71988200-71997400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:71988200-71997400	Weak transcription	Left Ventricle	heart
3	chr6:71988400-71997800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:71991600-71997800	Weak transcription	Lung	lung
5	chr6:71991800-71997200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr6:71992000-71997800	Weak transcription	Esophagus	oesophagus
7	chr6:71993400-71997200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:71994200-71997800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:71994800-71997200	Weak transcription	Brain Substantia Nigra	brain
10	chr6:71994800-71997600	Weak transcription	Pancreas	Pancrea
11	chr6:71994800-71997800	Weak transcription	Gastric	stomach
12	chr6:71995200-71997400	Weak transcription	NHEK	skin
13	chr6:71995400-71997400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:71995600-71997600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:71995800-71997600	Enhancers	Psoas Muscle	Psoas
16	chr6:71996000-71997400	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr6:71996200-71997600	Weak transcription	Spleen	Spleen
18	chr6:71996600-71997200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:71996600-71997600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr6:71996600-71997600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:71996800-71997400	Enhancers	Primary B cells from peripheral blood	blood
22	chr6:71996800-71997400	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr6:71996800-71997400	Enhancers	Adipose Nuclei	Adipose
24	chr6:71996800-71997600	Enhancers	Primary T cells fromperipheralblood	blood
25	chr6:71996800-71997600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr6:71996800-71997800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr6:71996800-71997800	Enhancers	Fetal Thymus	thymus
28	chr6:71996800-71997800	Enhancers	Stomach Mucosa	stomach
29	chr6:71996800-71998000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr6:71996800-71998200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
31	chr6:71997000-71997200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:71997000-71997200	Enhancers	Primary hematopoietic stem cells	blood
33	chr6:71997000-71997200	Flanking Active TSS	Brain Angular Gyrus	brain
34	chr6:71997000-71997200	Enhancers	Brain Cingulate Gyrus	brain
35	chr6:71997000-71997200	Enhancers	Brain Hippocampus Middle	brain
36	chr6:71997000-71997200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
37	chr6:71997000-71997200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
38	chr6:71997000-71997200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
39	chr6:71997000-71997200	Enhancers	Thymus	Thymus
40	chr6:71997000-71997200	Flanking Active TSS	NHLF	lung
41	chr6:71997000-71997400	Enhancers	Primary T helper naive cells from peripheral blood	blood
42	chr6:71997000-71997400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr6:71997000-71997400	Enhancers	Brain Anterior Caudate	brain
44	chr6:71997000-71997400	Enhancers	Colon Smooth Muscle	Colon
45	chr6:71997000-71997400	Enhancers	Rectal Smooth Muscle	rectum
46	chr6:71997000-71997600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr6:71997000-71997600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr6:71997000-71997600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr6:71997000-71997600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
50	chr6:71997000-71997600	Enhancers	Primary T helper cells PMA-I stimulated	--

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