Variant report

Variant	rs7748559
Chromosome Location	chr6:71993701-71993702
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1044762	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1056849	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1135027	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11751548	0.94[CEU][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11968687	0.84[ASW][hapmap];0.94[CEU][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13209437	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13216841	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1535524	0.85[CEU][hapmap]
rs1885674	0.94[CEU][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs2295956	0.86[TSI][hapmap]
rs34141332	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34724667	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35051193	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62406869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67216056	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6906156	0.83[CEU][hapmap]
rs6929250	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6934130	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7742362	0.84[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7750007	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7773129	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs828629	0.81[CEU][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7748559	MTO1	cis	parietal	SCAN
rs7748559	OGFRL1	cis	cerebellum	SCAN
rs7748559	MTO1	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71988200-71997400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:71988200-71997400	Weak transcription	Left Ventricle	heart
3	chr6:71988400-71997800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:71991600-71997800	Weak transcription	Lung	lung
5	chr6:71991800-71997200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr6:71992000-71997800	Weak transcription	Esophagus	oesophagus
7	chr6:71993400-71996800	Weak transcription	Primary B cells from peripheral blood	blood
8	chr6:71993400-71997200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:71993600-71996800	Weak transcription	Primary B cells from cord blood	blood

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