Variant report

Variant	rs62406869
Chromosome Location	chr6:71995691-71995692
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1044762	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1056849	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1135027	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11751548	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11968687	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13209437	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13216841	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1885674	0.86[EUR][1000 genomes]
rs34141332	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34724667	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35051193	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67216056	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6929250	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6934130	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7742362	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7748559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7750007	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7773129	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71988200-71997400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:71988200-71997400	Weak transcription	Left Ventricle	heart
3	chr6:71988400-71997800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:71991600-71997800	Weak transcription	Lung	lung
5	chr6:71991800-71997200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr6:71992000-71997800	Weak transcription	Esophagus	oesophagus
7	chr6:71993400-71996800	Weak transcription	Primary B cells from peripheral blood	blood
8	chr6:71993400-71997200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:71993600-71996800	Weak transcription	Primary B cells from cord blood	blood
10	chr6:71994200-71997800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:71994800-71995800	Weak transcription	Psoas Muscle	Psoas
12	chr6:71994800-71997000	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr6:71994800-71997200	Weak transcription	Brain Substantia Nigra	brain
14	chr6:71994800-71997600	Weak transcription	Pancreas	Pancrea
15	chr6:71994800-71997800	Weak transcription	Gastric	stomach
16	chr6:71995200-71997400	Weak transcription	NHEK	skin
17	chr6:71995400-71997000	Weak transcription	HMEC	breast
18	chr6:71995400-71997400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:71995600-71997000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:71995600-71997600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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