Variant report

Variant	rs16882367
Chromosome Location	chr7:140682073-140682074
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:140637228..140638913-chr7:140681368..140684006,2	MCF-7	breast:
2	chr7:140681893..140682531-chr7:140692420..140692920,2	MCF-7	breast:
3	chr7:140676052..140677997-chr7:140681862..140683779,2	MCF-7	breast:
4	chr7:140672428..140674348-chr7:140681005..140683175,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10240888	0.88[ASN][1000 genomes]
rs10255167	0.84[ASN][1000 genomes]
rs1044927	1.00[CHB][hapmap]
rs10488098	0.82[JPT][hapmap]
rs10952364	1.00[CHB][hapmap]
rs12538296	0.82[ASN][1000 genomes]
rs13234490	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs13236704	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs13438609	0.83[ASN][1000 genomes]
rs1476816	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs1476868	0.82[JPT][hapmap]
rs17622717	0.82[JPT][hapmap]
rs17623204	0.82[JPT][hapmap]
rs17695341	0.82[JPT][hapmap]
rs17695623	0.82[JPT][hapmap]
rs17695935	0.82[JPT][hapmap]
rs17695995	0.82[JPT][hapmap]
rs1968140	0.82[JPT][hapmap]
rs2079827	0.88[ASN][1000 genomes]
rs246739	0.88[ASN][1000 genomes]
rs3805116	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs38715	1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs38717	0.86[ASN][1000 genomes]
rs38718	0.84[ASN][1000 genomes]
rs38720	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs38722	1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs38723	1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs38726	0.85[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs38734	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs38738	1.00[LWK][hapmap]
rs38739	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs38740	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4726225	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs488795	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs512509	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs528957	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs557962	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs58901822	0.88[ASN][1000 genomes]
rs59315265	1.00[AMR][1000 genomes]
rs60164573	0.83[ASN][1000 genomes]
rs62485391	0.83[ASN][1000 genomes]
rs62485451	0.83[ASN][1000 genomes]
rs62485452	0.84[ASN][1000 genomes]
rs62485453	0.88[ASN][1000 genomes]
rs6464217	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs6464260	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs6662	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs6971577	1.00[CHB][hapmap]
rs7801518	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs7810757	0.82[JPT][hapmap]
rs801127	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9274	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017980	chr7:140601863-140721368	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1030195	chr7:140615828-140746345	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1026448	chr7:140636599-140716829	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv1797438	chr7:140666808-140682332	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140680800-140683200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr7:140681200-140683600	Enhancers	Primary hematopoietic stem cells	blood
3	chr7:140681400-140682800	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr7:140681400-140683400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr7:140681400-140683600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr7:140681600-140682600	Enhancers	Fetal Intestine Large	intestine
7	chr7:140681600-140682800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
8	chr7:140682000-140682600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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