Variant report

Variant	rs16883186
Chromosome Location	chr6:73737589-73737590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10498887	0.80[CEU][hapmap];0.84[CHB][hapmap];0.87[CHD][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.89[EUR][1000 genomes]
rs10498888	0.80[CEU][hapmap];0.89[EUR][1000 genomes]
rs16883192	0.80[CEU][hapmap];0.84[CHB][hapmap];0.89[EUR][1000 genomes]
rs16883205	0.80[CEU][hapmap];0.84[CHB][hapmap];0.89[EUR][1000 genomes]
rs16883209	0.80[CEU][hapmap];0.84[CHB][hapmap];0.87[CHD][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.89[EUR][1000 genomes]
rs1891405	0.80[CEU][hapmap];0.86[EUR][1000 genomes]
rs6453616	0.81[CHD][hapmap]
rs6453618	0.90[CEU][hapmap];0.92[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73710000-73740000	Weak transcription	HMEC	breast
2	chr6:73717800-73737800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:73718600-73739400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:73722200-73751800	Weak transcription	Primary B cells from cord blood	blood
5	chr6:73734600-73740200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:73734600-73742200	Weak transcription	HSMMtube	muscle
7	chr6:73734800-73739600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr6:73734800-73742200	Weak transcription	Osteobl	bone
9	chr6:73735000-73739800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:73735000-73740200	Weak transcription	HSMM	muscle
11	chr6:73736200-73738000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr6:73737200-73737600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr6:73737200-73738200	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr6:73737400-73738000	Enhancers	Primary T cells from cord blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links