Variant report

Variant	rs16883205
Chromosome Location	chr6:73740571-73740572
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73736653..73738823-chr6:73740271..73742330,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10498887	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10498888	1.00[CEU][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16883186	0.80[CEU][hapmap];0.84[CHB][hapmap];0.89[EUR][1000 genomes]
rs16883192	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16883209	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1891405	1.00[CEU][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6453618	0.89[CEU][hapmap];0.92[CHB][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73722200-73751800	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73734600-73742200	Weak transcription	HSMMtube	muscle
3	chr6:73734800-73742200	Weak transcription	Osteobl	bone
4	chr6:73737800-73740600	Enhancers	K562	blood
5	chr6:73738200-73751600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:73738400-73746400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:73738600-73740600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:73738600-73742600	Weak transcription	Gastric	stomach
9	chr6:73738800-73741200	Weak transcription	Fetal Heart	heart
10	chr6:73739400-73741400	Enhancers	GM12878-XiMat	blood
11	chr6:73739400-73743000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:73739600-73741000	Enhancers	Muscle Satellite Cultured Cells	--
13	chr6:73739800-73741000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:73739800-73741400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:73740000-73741400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:73740000-73743200	Enhancers	HMEC	breast
17	chr6:73740200-73740600	Enhancers	Stomach Mucosa	stomach
18	chr6:73740200-73740800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:73740200-73742200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:73740200-73742600	Enhancers	HSMM	muscle
21	chr6:73740400-73740600	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr6:73740400-73740600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr6:73740400-73740600	Enhancers	Hela-S3	cervix
24	chr6:73740400-73741600	Weak transcription	NHEK	skin

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