Variant report

Variant	rs16883192
Chromosome Location	chr6:73738533-73738534
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:73330877..73331817-chr6:73737852..73738715,4	MCF-7	breast:
2	chr6:73737865..73738687-chr6:73794476..73795161,2	MCF-7	breast:
3	chr6:73330978..73331783-chr6:73738113..73738655,2	MCF-7	breast:
4	chr6:73331290..73331817-chr6:73737852..73738715,3	MCF-7	breast:
5	chr6:73736653..73738823-chr6:73740271..73742330,2	K562	blood:
6	chr6:73738206..73738747-chr6:73814378..73815243,2	MCF-7	breast:
7	chr6:73657119..73659540-chr6:73737347..73739182,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185760	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10498887	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10498888	1.00[CEU][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16883186	0.80[CEU][hapmap];0.84[CHB][hapmap];0.89[EUR][1000 genomes]
rs16883205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16883209	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1891405	1.00[CEU][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6453618	0.89[CEU][hapmap];0.92[CHB][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73710000-73740000	Weak transcription	HMEC	breast
2	chr6:73718600-73739400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:73722200-73751800	Weak transcription	Primary B cells from cord blood	blood
4	chr6:73734600-73740200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:73734600-73742200	Weak transcription	HSMMtube	muscle
6	chr6:73734800-73739600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr6:73734800-73742200	Weak transcription	Osteobl	bone
8	chr6:73735000-73739800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:73735000-73740200	Weak transcription	HSMM	muscle
10	chr6:73737600-73739000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr6:73737600-73739200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr6:73737800-73738600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:73737800-73738600	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr6:73737800-73738800	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr6:73737800-73738800	Enhancers	Placenta Amnion	Placenta Amnion
16	chr6:73737800-73738800	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr6:73737800-73739000	Enhancers	H1 Cell Line	embryonic stem cell
18	chr6:73737800-73739200	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr6:73737800-73739200	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr6:73737800-73739200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:73737800-73740600	Enhancers	K562	blood
22	chr6:73738000-73738800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr6:73738000-73739200	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr6:73738200-73738800	Enhancers	H9 Cell Line	embryonic stem cell
25	chr6:73738200-73751600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr6:73738400-73738800	Enhancers	Fetal Heart	heart
27	chr6:73738400-73740400	Weak transcription	Hela-S3	cervix
28	chr6:73738400-73746400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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