Variant report

Variant	rs16883337
Chromosome Location	chr8:113279633-113279634
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1019350	0.94[YRI][hapmap]
rs11783495	0.94[YRI][hapmap]
rs16883329	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16883360	0.94[YRI][hapmap]
rs2111426	0.94[YRI][hapmap]
rs61753738	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700902	0.86[AFR][1000 genomes]
rs73709204	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709209	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs929686	0.94[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113275400-113280200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:113276200-113280200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr8:113276200-113280400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr8:113276400-113280200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr8:113278000-113281800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:113278200-113281400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr8:113278600-113280800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:113279200-113279800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr8:113279200-113281000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr8:113279200-113281200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr8:113279400-113281000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr8:113279400-113281400	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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