Variant report

Variant	rs16883643
Chromosome Location	chr8:35040760-35040761
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10503977	1.00[AMR][1000 genomes]
rs12114466	1.00[AMR][1000 genomes]
rs12114702	1.00[AMR][1000 genomes]
rs12115168	1.00[AMR][1000 genomes]
rs1406375	1.00[AMR][1000 genomes]
rs16875831	1.00[AMR][1000 genomes]
rs16883710	1.00[AMR][1000 genomes]
rs16883802	1.00[AMR][1000 genomes]
rs16883822	1.00[AMR][1000 genomes]
rs16883832	1.00[AMR][1000 genomes]
rs16883863	1.00[AMR][1000 genomes]
rs16883869	1.00[AMR][1000 genomes]
rs16883881	1.00[AMR][1000 genomes]
rs16883906	1.00[AMR][1000 genomes]
rs6985876	1.00[AMR][1000 genomes]
rs6986406	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6987530	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6993424	1.00[AMR][1000 genomes]
rs6993532	1.00[AMR][1000 genomes]
rs7003900	1.00[AMR][1000 genomes]
rs7005513	1.00[AMR][1000 genomes]
rs7007689	1.00[AMR][1000 genomes]
rs7008464	1.00[AMR][1000 genomes]
rs7008790	1.00[AMR][1000 genomes]
rs7010075	1.00[AMR][1000 genomes]
rs7823780	1.00[AMR][1000 genomes]
rs7825411	1.00[AMR][1000 genomes]
rs7827351	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7828569	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7832717	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831284	chr8:35018419-35193084	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv429910	chr8:35021411-35257445	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35040000-35040800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:35040000-35041000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr8:35040000-35041000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr8:35040000-35041200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr8:35040000-35041400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr8:35040200-35040800	Enhancers	H1 Cell Line	embryonic stem cell
7	chr8:35040200-35040800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr8:35040200-35041000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr8:35040200-35041800	Enhancers	H9 Cell Line	embryonic stem cell
10	chr8:35040400-35041000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr8:35040400-35041200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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