Variant report

Variant	rs16883822
Chromosome Location	chr8:35186753-35186754
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10503977	1.00[AMR][1000 genomes]
rs12114466	1.00[AMR][1000 genomes]
rs12114702	1.00[AMR][1000 genomes]
rs12115168	1.00[AMR][1000 genomes]
rs1406375	1.00[AMR][1000 genomes]
rs16875831	1.00[AMR][1000 genomes]
rs16883643	1.00[AMR][1000 genomes]
rs16883710	1.00[AMR][1000 genomes]
rs16883802	1.00[AMR][1000 genomes]
rs16883832	1.00[AMR][1000 genomes]
rs16883863	1.00[AMR][1000 genomes]
rs16883869	1.00[AMR][1000 genomes]
rs16883881	1.00[AMR][1000 genomes]
rs16883906	1.00[AMR][1000 genomes]
rs16883918	1.00[AMR][1000 genomes]
rs28535952	1.00[AMR][1000 genomes]
rs6981879	1.00[AMR][1000 genomes]
rs6985876	1.00[AMR][1000 genomes]
rs6986406	1.00[AMR][1000 genomes]
rs6987530	1.00[AMR][1000 genomes]
rs6993424	1.00[AMR][1000 genomes]
rs6993532	1.00[AMR][1000 genomes]
rs7003900	1.00[AMR][1000 genomes]
rs7005513	1.00[AMR][1000 genomes]
rs7007689	1.00[AMR][1000 genomes]
rs7008464	1.00[AMR][1000 genomes]
rs7008790	1.00[AMR][1000 genomes]
rs7010075	1.00[AMR][1000 genomes]
rs7823780	1.00[AMR][1000 genomes]
rs7825411	1.00[AMR][1000 genomes]
rs7827351	1.00[AMR][1000 genomes]
rs7828569	1.00[AMR][1000 genomes]
rs7832717	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831284	chr8:35018419-35193084	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv429910	chr8:35021411-35257445	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv520421	chr8:35155517-35479468	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv890717	chr8:35184361-35315188	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35182800-35188000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr8:35185000-35187400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:35185400-35187400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:35185400-35196200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:35185400-35204000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr8:35185600-35187200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr8:35185600-35187400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr8:35185600-35187400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr8:35185600-35191400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr8:35186000-35187400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr8:35186000-35188200	Enhancers	H1 Cell Line	embryonic stem cell
12	chr8:35186200-35194000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr8:35186400-35187200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr8:35186400-35188800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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