Variant report

Variant	rs6981879
Chromosome Location	chr8:35276513-35276514
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10503977	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12114466	1.00[AMR][1000 genomes]
rs12114702	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12115168	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1406375	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16875831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16883710	1.00[AMR][1000 genomes]
rs16883802	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16883822	1.00[AMR][1000 genomes]
rs16883832	1.00[AMR][1000 genomes]
rs16883863	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16883869	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16883881	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16883906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16883918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28535952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6985876	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6993424	1.00[AMR][1000 genomes]
rs6993532	1.00[AMR][1000 genomes]
rs7003900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7005513	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7007689	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7008464	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7008790	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7010075	1.00[AMR][1000 genomes]
rs7823780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7825411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7832717	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv520421	chr8:35155517-35479468	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv890717	chr8:35184361-35315188	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35270600-35278600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:35271200-35276600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:35272000-35276800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:35274800-35276600	Enhancers	Fetal Heart	heart
5	chr8:35276000-35276600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr8:35276000-35276800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr8:35276000-35276800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr8:35276000-35276800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr8:35276000-35282000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr8:35276200-35276800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr8:35276200-35276800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr8:35276200-35277600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
13	chr8:35276200-35277800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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