Variant report

Variant	rs7007689
Chromosome Location	chr8:35220076-35220077
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10503977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12114466	1.00[AMR][1000 genomes]
rs12114702	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12115168	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1406375	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16875831	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16883643	1.00[AMR][1000 genomes]
rs16883710	1.00[AMR][1000 genomes]
rs16883802	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16883822	1.00[AMR][1000 genomes]
rs16883832	1.00[AMR][1000 genomes]
rs16883863	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16883869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16883881	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16883906	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16883918	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28535952	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6981879	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6985876	1.00[AMR][1000 genomes]
rs6986406	1.00[AMR][1000 genomes]
rs6987530	1.00[AMR][1000 genomes]
rs6993424	1.00[AMR][1000 genomes]
rs6993532	1.00[AMR][1000 genomes]
rs7003900	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7005513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7008464	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7008790	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7010075	1.00[AMR][1000 genomes]
rs7823780	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7825411	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7827351	1.00[AMR][1000 genomes]
rs7828569	1.00[AMR][1000 genomes]
rs7832717	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv429910	chr8:35021411-35257445	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv520421	chr8:35155517-35479468	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv890717	chr8:35184361-35315188	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv1830629	chr8:35218820-35256073	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35208800-35220600	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr8:35211200-35231000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:35212400-35222600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr8:35212800-35225200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:35213200-35220800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr8:35219800-35221200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
7	chr8:35220000-35220800	Weak transcription	H1 Cell Line	embryonic stem cell

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