Variant report

Variant	rs16884054
Chromosome Location	chr4:30766250-30766251
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:56735295..56736800-chr4:30764497..30766371,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000202077	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10019730	1.00[EUR][1000 genomes]
rs10030137	1.00[CEU][hapmap];0.92[YRI][hapmap];1.00[EUR][1000 genomes]
rs13353549	1.00[EUR][1000 genomes]
rs1447370	1.00[CEU][hapmap]
rs16884029	1.00[CEU][hapmap];0.92[YRI][hapmap];1.00[EUR][1000 genomes]
rs16884052	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884127	1.00[CEU][hapmap]
rs28604938	1.00[EUR][1000 genomes]
rs28715457	1.00[EUR][1000 genomes]
rs41530644	1.00[CEU][hapmap];0.92[YRI][hapmap];1.00[EUR][1000 genomes]
rs73213179	1.00[EUR][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30737400-30770800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:30746400-30767000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:30759200-30770800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:30760400-30766800	Weak transcription	Fetal Heart	heart
5	chr4:30760400-30768600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:30760400-30769000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:30762000-30767200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:30762600-30767400	Weak transcription	Left Ventricle	heart
9	chr4:30762800-30770400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr4:30763000-30770400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr4:30763000-30770800	Weak transcription	Aorta	Aorta
12	chr4:30764200-30773000	Enhancers	HUVEC	blood vessel
13	chr4:30765400-30770000	Weak transcription	Fetal Lung	lung
14	chr4:30765600-30769000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr4:30765800-30767000	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr4:30765800-30769800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr4:30765800-30769800	Weak transcription	Colon Smooth Muscle	Colon
18	chr4:30766000-30767000	Weak transcription	Hela-S3	cervix
19	chr4:30766000-30767600	Enhancers	NHEK	skin
20	chr4:30766000-30768800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr4:30766000-30770000	Weak transcription	Fetal Stomach	stomach
22	chr4:30766000-30771000	Weak transcription	Rectal Smooth Muscle	rectum
23	chr4:30766000-30778000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr4:30766200-30767400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr4:30766200-30767600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr4:30766200-30770800	Weak transcription	Brain Hippocampus Middle	brain

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